View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_82 (Length: 271)

Name: NF1250_low_82
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_82
NF1250_low_82
[»] chr4 (1 HSPs)
chr4 (1-240)||(14224887-14225126)
[»] scaffold0177 (1 HSPs)
scaffold0177 (1-240)||(33606-33845)
[»] chr1 (1 HSPs)
chr1 (1-240)||(18486444-18486681)
[»] scaffold1407 (1 HSPs)
scaffold1407 (1-229)||(1-227)
[»] chr5 (1 HSPs)
chr5 (1-240)||(20932725-20932964)
[»] scaffold0029 (2 HSPs)
scaffold0029 (49-240)||(87057-87248)
scaffold0029 (1-33)||(87267-87299)
[»] chr7 (1 HSPs)
chr7 (1-240)||(15934065-15934302)
[»] scaffold0453 (1 HSPs)
scaffold0453 (1-240)||(13099-13336)
[»] scaffold0035 (1 HSPs)
scaffold0035 (3-240)||(96189-96423)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14224887 - 14225126
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14224887 tgttacaccgtatagactaaggcatttattttcctttttttatctttattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 14224986  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    |||||||||||||||||||       |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14224987 caatcgacgaaatcgaacgttttttacatatcagacgccaagttgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctcttaagga 14225086  T
Q  201 ctttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  14225087 ctttgccgtcccatcccaggacgagcctcactcaagtatt 14225126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33606 - 33845
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33606 tgttacaccgtatagactaaggcatttattttcctttttttatctttattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 33705  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    |||||||||||||||||||       |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  33706 caatcgacgaaatcgaacgttttttacatatcagacgccaagttgaacgaattcacgctgaaatggaattagctcataacgcgaaccgtcctcttaagga 33805  T
Q  201 ctttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  33806 ctttgccgtcccatcccaggacgagcctcactcaagtatt 33845  T

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Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18486681 - 18486444
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18486681 tgttacaccgtatagactaaggcatttattttcttttttt--tttctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 18486584  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    |||||||||||||||||||       |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18486583 caatcgacgaaatcgaacgttttttacatatcagacgccaagttgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctcttaagga 18486484  T
Q  201 ctttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  18486483 ctttgccgtcccatcccaggacgagcctcactcaagtatt 18486444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1407 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 227 - 1
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  227 tgttacaccgtatagactaaggcatttattttctttttt--atctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 130  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    |||||||||||||||||||       |||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  129 caatcgacgaaatcgaacgttttttacatatcagacgccaagttgaacgaattcacgctgaaatggaattagctcataacgcgaaccgtcctcttaagga 30  T
Q  201 ctttgccgtcccatcccaagacgagcctc 229  Q
    |||||||||||||||||| ||||||||||    
T  29 ctttgccgtcccatcccaggacgagcctc 1  T

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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20932964 - 20932725
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20932964 tgttacaccgtatagactaaggcatttattttcttttttttatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 20932865  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    ||||||||||||||||| |       ||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  20932864 caatcgacgaaatcgaatgttttttacatattagacgccaagttgaacgaattcacgctgaaatggaacaagctcataacgcgatccgtcctcttaagga 20932765  T
Q  201 ctttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||| | |||||||||||||| ||||||    
T  20932764 ctttgccgtcccatcctaggacgagcctcactcgagtatt 20932725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 87248 - 87057
Alignment:
Q  49 ttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgaccaatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaac 148  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||       ||||| |||||| |||| ||||    
T  87248 ttcgtcgattatatgccaagtactcgatcatctgaggacaatctagagcaaccaatcgacgaaatcgaacgttttttacatattagacgccaagttgaac 87149  T
Q  149 gaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaaggactttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  87148 gaatacacgctcaaatggcactagctcataacgcgaaccgtcctcttaaggactttgccgtcccatcccaggacgagcctcactcaagtatt 87057  T

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Target: scaffold0029; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 87299 - 87267
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttc 33  Q
    |||||||||||||||||||||||||||||||||    
T  87299 tgttacaccgtatagactaaggcatttattttc 87267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15934065 - 15934302
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctatt-cgtcgattatatgccaagtactcgatcctctgaggacaatctagagcga 99  Q
    |||||||||||||||||||||||||||||||||        |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15934065 tgttacaccgtatagactaaggcatttattttcttttt---atctctttttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcaa 15934161  T
Q  100 ccaatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagg 199  Q
    ||||| ||||||||||||||       ||||| |||||| |||| |||||||| |||||| |||||| |||||||| |||||||||||||||||| ||||    
T  15934162 ccaattgacgaaatcgaacgttttttacatattagacgccaagttgaacgaatacacgctcaaatggcactagctcgtaacgcgaaccgtcctcttaagg 15934261  T
Q  200 actttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  15934262 actttgccgtcccatcccagaacgagcctcactcaagtatt 15934302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13099 - 13336
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  13099 tgttacactgtatagactaaggcatttattttctttttt--atctctattcgtcgattatatgccaaatactcgatcctctgaggacaacctagagcaac 13196  T
Q  101 caatcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaagga 200  Q
    |||||||||||||||||||       ||||| |||||| |||| |||||||| |||||| ||||||||| ||||||||||| |||||||||||| |||||    
T  13197 caatcgacgaaatcgaacgttttttacatattagacgccaagttgaacgaatacacgctcaaatggaacaagctcataacgtgaaccgtcctcttaagga 13296  T
Q  201 ctttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||||| ||| |||||||||| ||||||    
T  13297 ctttgccgtcccatcccaggacaagcctcactcgagtatt 13336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 96423 - 96189
Alignment:
Q  3 ttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgacca 102  Q
    |||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  96423 ttacaccgtatagactaaggcatttattttctcttt---atctcttttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcaacca 96327  T
Q  103 atcgacgaaatcgaacgnnnnnnncatatcagacgctaagtcgaacgaattcacgctgaaatggaactagctcataacgcgaaccgtcctctaaaggact 202  Q
    ||||||||||||||| |       ||||| |||||| |||| |||||||| |||| | |||||| ||||||||||||| | ||||||||||| |||||||    
T  96326 atcgacgaaatcgaatgttttttacatattagacgccaagttgaacgaatacacgttcaaatggcactagctcataacccaaaccgtcctcttaaggact 96227  T
Q  203 ttgccgtcccatcccaagacgagcctcactcaagtatt 240  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  96226 ttgccgtcccatcccaggacgagcctcactcgagtatt 96189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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