View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_84 (Length: 269)

Name: NF1250_low_84
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_84
NF1250_low_84
[»] chr8 (14 HSPs)
chr8 (34-247)||(218615-218827)
chr8 (34-247)||(695175-695387)
chr8 (34-247)||(699384-699596)
chr8 (34-247)||(732238-732450)
chr8 (34-247)||(856134-856346)
chr8 (34-247)||(220934-221132)
chr8 (34-247)||(690089-690287)
chr8 (34-247)||(734557-734755)
chr8 (34-247)||(858453-858651)
chr8 (34-121)||(217436-217523)
chr8 (34-121)||(693996-694083)
chr8 (34-121)||(698205-698292)
chr8 (34-121)||(731059-731146)
chr8 (34-121)||(854954-855041)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 218615 - 218827
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  218615 caatgttgtcttatcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggattccttttccttaaaattt 218714  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  218715 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 218813  T
Q  234 gtacctttgcttct 247  Q
    |||||||| |||||    
T  218814 gtaccttttcttct 218827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 695175 - 695387
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  695175 caatgttgtcttatcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggattccttttccttaaaattt 695274  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  695275 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 695373  T
Q  234 gtacctttgcttct 247  Q
    |||||||| |||||    
T  695374 gtaccttttcttct 695387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 699384 - 699596
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  699384 caatgttgtcttatcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggattccttttccttaaaattt 699483  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  699484 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 699582  T
Q  234 gtacctttgcttct 247  Q
    |||||||| |||||    
T  699583 gtaccttttcttct 699596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 732238 - 732450
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  732238 caatgttgtcttatcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggattccttttccttaaaattt 732337  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  732338 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 732436  T
Q  234 gtacctttgcttct 247  Q
    |||||||| |||||    
T  732437 gtaccttttcttct 732450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 856134 - 856346
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  856134 caatgttgtcttatcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggattccttttccttaaaattt 856233  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  856234 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 856332  T
Q  234 gtacctttgcttct 247  Q
    |||||||| |||||    
T  856333 gtaccttttcttct 856346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 220934 - 221132
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              ||||    
T  220934 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggat--------------attt 221019  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||  |||||  |||||||||||||||||||||||||||||| ||||||||||||     
T  221020 cttggaagtttcggtatgggtccaaaaaaatagattaaaaggcaatgaattgctcatcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 221118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 690089 - 690287
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              ||||    
T  690089 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggat--------------attt 690174  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||  |||||  |||||||||||||||||||||||||||||| ||||||||||||     
T  690175 cttggaagtttcggtatgggtccaaaaaaatagattaaaaggcaatgaattgctcatcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 690273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 734557 - 734755
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              ||||    
T  734557 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggat--------------attt 734642  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||  |||||  |||||||||||||||||||||||||||||| ||||||||||||     
T  734643 cttggaagtttcggtatgggtccaaaaaaatagattaaaaggcaatgaattgctcatcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 734741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 858453 - 858651
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttttccttaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||              ||||    
T  858453 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggat--------------attt 858538  T
Q  134 cttggaagtttcggtgtgggtgcaaaaaattagattaaaaggcaatgggttgcttgtcattctatgccatcatcaatccatgtaagaaaaagcaaccgtc 233  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||  |||||  |||||||||||||||||||||||||||||| ||||||||||||     
T  858539 cttggaagtttcggtatgggtccaaaaaaatagattaaaaggcaatgaattgctcatcattctatgccatcatcaatccatgtaag-aaaagcaaccgtg 858637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 217436 - 217523
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttt 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  217436 caatgttgttttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggatttcttt 217523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 693996 - 694083
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttt 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  693996 caatgttgttttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggatttcttt 694083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 698205 - 698292
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttt 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  698205 caatgttgttttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggatttcttt 698292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 731059 - 731146
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttt 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  731059 caatgttgttttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggatttcttt 731146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 854954 - 855041
Alignment:
Q  34 caatgttgtcttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtatcggacgacttcggattccttt 121  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  854954 caatgttgttttgtcatgagaagggatttgcatatatccacattttctattgggatattttttgtattggacgacttcggatttcttt 855041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University