View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_low_87 (Length: 268)

Name: NF1250_low_87
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_low_87
NF1250_low_87
[»] chr8 (2 HSPs)
chr8 (93-263)||(35049555-35049723)
chr8 (93-175)||(35050147-35050229)
[»] scaffold0291 (2 HSPs)
scaffold0291 (95-175)||(5322-5402)
scaffold0291 (93-175)||(5527-5609)
[»] chr5 (3 HSPs)
chr5 (96-175)||(40974608-40974687)
chr5 (93-175)||(40973077-40973159)
chr5 (198-262)||(40973181-40973245)
[»] chr7 (2 HSPs)
chr7 (91-175)||(21704110-21704193)
chr7 (198-249)||(21704213-21704264)


Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 35049555 - 35049723
Alignment:
Q  93 gagaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttattnnnnnnnnnnnnnnnnn 192  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||                     
T  35049555 gagaaattcttagatggaaacgtaactaacatgtcagcatttacaaacaataaataaaaattttacacctcatttaatttattaaaaaaataaaaaatta 35049654  T
Q  193 nnnngtaatgatgaaacgtgttctccatattgcttgctcttcttccaccattattttcaggaattgtttct 263  Q
         |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35049655 aaa--taatgatgaaacttgtcctccatattgcttgctcttcttccaccattattttcaggaattgtttct 35049723  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 35050229 - 35050147
Alignment:
Q  93 gagaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  35050229 gagaaattcttagatgggaacgtaactaacatgtcaggatttacaaacaaccaataaaaacattacacctcaattaatttatt 35050147  T

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Target: scaffold0291 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 5322 - 5402
Alignment:
Q  95 gaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  5322 gaaattcttggatgggaacgtaagtaacatgtcagcatttacaaacaaccaatcaaaacattacacctcatttaatttatt 5402  T

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Target: scaffold0291; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 5609 - 5527
Alignment:
Q  93 gagaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    ||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||||||  |||||||||||||||||||||    
T  5609 gagaaattcttagatgggaacgtaagtaacatatcatcatttataaacaaccaataaaaatattacacctcatttaatttatt 5527  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 40974687 - 40974608
Alignment:
Q  96 aaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  40974687 aaattcttggatgggaacgtaagtaacatgtcagcatttacaaacaaccaataaaaagattacacctcatttaatttatt 40974608  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 40973077 - 40973159
Alignment:
Q  93 gagaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||    
T  40973077 gagaaattcttagattggaacgtaagtaacatgtcagcatttacaaacgatcaataaaaacattaaacctcatttaatttatt 40973159  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 40973181 - 40973245
Alignment:
Q  198 taatgatgaaacgtgttctccatattgcttgctcttcttccaccattattttcaggaattgtttc 262  Q
    ||| |||||||| ||| |||| ||||||||||| ||||||| |||||||||| ||||||||||||    
T  40973181 taaagatgaaacttgtcctccgtattgcttgctattcttccgccattattttgaggaattgtttc 40973245  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 21704110 - 21704193
Alignment:
Q  91 aagagaaattcttagatgggaacgtaactaacatgtcagcatttacaaacaaccaataaaaactttacacctcatttaatttatt 175  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  21704110 aagagaaattcttagatgggaatgtaagtaacatgtcagtatttacaaacaaccaat-aaaacattacacctcatttaatttatt 21704193  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 21704213 - 21704264
Alignment:
Q  198 taatgatgaaacgtgttctccatattgcttgctcttcttccaccattatttt 249  Q
    ||| |||||||| ||| |||| ||||||||||||||||||| ||||||||||    
T  21704213 taaagatgaaacatgtcctccttattgcttgctcttcttccgccattatttt 21704264  T

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