View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_88 (Length: 267)
Name: NF1250_low_88
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 41512425 - 41512230
Alignment:
| Q |
44 |
ctttaggcatgtacgtacttcattttatggcctctactttttgttaattttgtttgtagtcttcttttgttggcttgtcctttatgagttcttagtatat |
143 |
Q |
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| T |
41512425 |
ctttaggcatgtacgtacttcattttgtggcctctactttttgttaattttgtttgtagtcttcttttgttggcttgttctttatgagttcttagtata- |
41512327 |
T |
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| Q |
144 |
aaccttttgccattcaaaattgtcatatatgcttaagagaaatgattctctgacaacacaattttgatgttaattataaggttatttatatatatatt |
241 |
Q |
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| T |
41512326 |
-accttttgccattcaaaattgtcatatatgcttaagagaaatgattctctgacaacacaattttgatgttaattataaggttatttatatatatatt |
41512230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 41528376 - 41528301
Alignment:
| Q |
140 |
atataaccttttgccattcaaaattgtcatatatgcttaagagaaatgattctctgacaacacaattttgatgtta |
215 |
Q |
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|||||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
41528376 |
atataaccttttaacattcaaatttgtcgtatatgcttaagagaaatgattctttgacaacataattttgatgtta |
41528301 |
T |
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