View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_89 (Length: 267)
Name: NF1250_low_89
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 39954854 - 39954597
Alignment:
| Q |
1 |
tctgtttcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954854 |
tctgtttcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatct |
39954755 |
T |
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| Q |
101 |
cgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954754 |
cgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccct |
39954655 |
T |
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| Q |
201 |
caacttctttactacttcattactaatggtctctttctgcttgagtttgtccctatgc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39954654 |
caacttctttactacttcattactaatggtctctttctgcttgagtttgtccttatgc |
39954597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 39955034 - 39954797
Alignment:
| Q |
7 |
tcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatctcgtccc |
106 |
Q |
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|||||||||| ||||| ||| ||||| |||||| |||||| ||||||||| ||| || |||||||| |||||||||||| ||| ||||| ||| |
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| T |
39955034 |
tcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctcct |
39954935 |
T |
|
| Q |
107 |
tcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccctcaactt |
206 |
Q |
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| T |
39954934 |
tcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagctt |
39954835 |
T |
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| Q |
207 |
ctttactacttcattactaatggtctctttctgcttgagtt |
247 |
Q |
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| | |||||||||| | ||||| ||||||||||||||| |
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| T |
39954834 |
c---attacttcattattgatggtacctttctgcttgagtt |
39954797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 39955103 - 39955063
Alignment:
| Q |
103 |
tccctcaacttcattacgtcattacaaatggtatctttctg |
143 |
Q |
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| T |
39955103 |
tccctcaacttcattacttcattgcaaatggtatctttctg |
39955063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 39955036 - 39954927
Alignment:
| Q |
98 |
tctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttc |
197 |
Q |
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|||| ||||||||||||| ||| ||||| || ||||||||||||| |||||| || |||| || || | |||| |||||| ||| ||||||| || || |
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| T |
39955036 |
tctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctc |
39954937 |
T |
|
| Q |
198 |
cctcaacttc |
207 |
Q |
| |
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| |||||||| |
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| T |
39954936 |
cttcaacttc |
39954927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 39955107 - 39955031
Alignment:
| Q |
6 |
ttcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctt |
82 |
Q |
| |
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||||||||||| ||||||||||||||| |||||| |||||||||| ||||||| |||| |||||||| |||| |
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| T |
39955107 |
ttcttccctcaacttcattacttcattgcaaatggtatctttctgcttcagttcatctctctgagcttcattctctt |
39955031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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