View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_9 (Length: 586)
Name: NF1250_low_9
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Complemental strand, 40221666 - 40221120
Alignment:
| Q |
13 |
aatatcaattgctagattgtagttgaaatagcacctagtttaataatcaatagccttgttaatgttctcagctcaagcatcaagttaatcattgctgctg |
112 |
Q |
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| T |
40221666 |
aatatcaattgctagattgtagttgaaatagcacctagtttaattatcaatagccttgttaatgttctcagctcaagcatcaagttaatcattgctgctg |
40221567 |
T |
|
| Q |
113 |
aatgtatagttacctgctgagatannnnnnngaatatctcgtgcgaggaaattgagacagtcattgtacagtactaactgataaataaccacttgatttt |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40221566 |
aatgtatagttacctgctgagatatttttttgaatatctcgtgcgaggaaattgagacaatcattgtacagtactaactgataaataaccacttgatttt |
40221467 |
T |
|
| Q |
213 |
acaggtctcttctggtgatgagaggaaacagtgctgacatggcaaggcacgtcatgtgtccatctcctaacagaagggtaagcatcaccttcttcagagt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221466 |
acaggtctcttctggtgatgagaggaaacagtgctgacatggcaaggcatgtcatgtgtccatctcctaacagaagggtaagcatcaccttcttcagagt |
40221367 |
T |
|
| Q |
313 |
gaggccagactccaatcaatgtcaatcaccaactcctaccatgacaagcgcaatgactatgtggcaacctgccatcgctaacccgtatgctttgccaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221366 |
gaggccagactccaatcaatgtcaatcaccaactcctaccatgacaagcgcaatgactatgtggcaacctgccatcgctaacccgtatgctttgccaaat |
40221267 |
T |
|
| Q |
413 |
ggagctttaagttgtggctatgatggtatggacatgatgatgcccaaatggggaatgcttcctggcccgatgatgatgctgacacctatgcgtcctatgg |
512 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40221266 |
ggagctttaagctgtggctatgatggtatggacatgatgatgcccaaatggggaatgcttcccggcccgatgatgatgctgacacctatgcgtcctatgg |
40221167 |
T |
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| Q |
513 |
cagtgaatccccgcaaactggctgggggtggtactggagtcttcttg |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221166 |
cagtgaatccccgcaaactggctgggggtggtactggagtcttcttg |
40221120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 37508011 - 37507910
Alignment:
| Q |
214 |
caggtctcttctggtgatgagaggaaacagtgctgacatggcaaggcacgtcatgtgtccatctcctaacagaagggtaagcatcaccttcttcagagtg |
313 |
Q |
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|||||||||| | ||||||| |||||||||||||||||||||||| || || ||| ||||||| |||||| ||||| |||||||||||||| |||||| |
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| T |
37508011 |
caggtctcttttagtgatgaaaggaaacagtgctgacatggcaagccatgtgatgcgtccatccactaacaagagggtgagcatcaccttctttagagtg |
37507912 |
T |
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| Q |
314 |
ag |
315 |
Q |
| |
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|| |
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| T |
37507911 |
ag |
37507910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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