View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_96 (Length: 262)
Name: NF1250_low_96
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 42287547 - 42287765
Alignment:
| Q |
29 |
aaaataatgataatggttttaatttttagaacatattaaaaatcccaccaaatttaagctaaatcaaggtaattgaattgaacaatttggttgatgtcat |
128 |
Q |
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| T |
42287547 |
aaaataatgataatggttttaatttttagaacatattaaaaatcccaccaaatttaagctaaatcaaggtaattgaattgaacaatttggttgatgtcat |
42287646 |
T |
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| Q |
129 |
gnnnnnnnnnnnncatgtagtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggtatctgatt |
228 |
Q |
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| T |
42287647 |
gatatattatat-catgtagtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggtatctgatt |
42287745 |
T |
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| Q |
229 |
tctccatttattttcttgga |
248 |
Q |
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|||||||||||||| ||||| |
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| T |
42287746 |
tctccatttatttttttgga |
42287765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 42159498 - 42159405
Alignment:
| Q |
142 |
catgtagtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggtatctgatttctccat |
235 |
Q |
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| T |
42159498 |
catgtagtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctacactcataagtatccaggtatttgatttctccat |
42159405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 42169541 - 42169468
Alignment:
| Q |
147 |
agtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggt |
220 |
Q |
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| T |
42169541 |
agtatgaaggtgctgcaaaagaaggtgggagaggagcaagtatatgggacacctatactcataaatacccaggt |
42169468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 30358955 - 30359028
Alignment:
| Q |
147 |
agtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggt |
220 |
Q |
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||||||||||| |||| || |||||||| | |||| ||||||||||||| |||| |||||| || ||||||||| |
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| T |
30358955 |
agtacgaaggttctgcaaaggaaggtggcaaaggaacaagtatatgggatacctttactcacaaatatccaggt |
30359028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 25161154 - 25161078
Alignment:
| Q |
146 |
tagtacgaaggtgctgctaaagaaggtgggagaggagcaagtatatgggacacctatactcataagtatccaggtat |
222 |
Q |
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| T |
25161154 |
tagttcgaaggtgcagcaacagaaggtggtagaacaccaagtatatgggacacctttactcatagatatcctggtat |
25161078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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