View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_low_97 (Length: 262)
Name: NF1250_low_97
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 30275656 - 30275853
Alignment:
| Q |
23 |
agagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgtttaataatgta |
122 |
Q |
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| T |
30275656 |
agagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgtttaataatgta |
30275755 |
T |
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| Q |
123 |
tggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccagctccgcca |
222 |
Q |
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| T |
30275756 |
tggtaat--tgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccagctccgcca |
30275853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 7778967 - 7779164
Alignment:
| Q |
23 |
agagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgtttaataatgta |
122 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7778967 |
agagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagtaatgtttaataatata |
7779066 |
T |
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| Q |
123 |
tggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccagctccgcca |
222 |
Q |
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| T |
7779067 |
tggtaat--tgaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgttcttttgaagatccagctccgcca |
7779164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
47 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
103 |
Q |
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|||||||||||||||| | | ||||||||||| ||||||| || || |||||||||| |
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| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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