View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1251-Insertion-2 (Length: 777)

Name: NF1251-Insertion-2
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1251-Insertion-2
NF1251-Insertion-2
[»] chr6 (10 HSPs)
chr6 (7-580)||(24916079-24916643)
chr6 (580-772)||(19478726-19478931)
chr6 (580-720)||(17289607-17289744)
chr6 (526-580)||(12502020-12502074)
chr6 (526-580)||(18642300-18642354)
chr6 (526-580)||(34841522-34841576)
chr6 (527-580)||(12513101-12513154)
chr6 (633-720)||(10485752-10485837)
chr6 (633-675)||(14450649-14450691)
chr6 (649-721)||(17280926-17280998)
[»] chr5 (7 HSPs)
chr5 (579-772)||(14374710-14374918)
chr5 (580-777)||(13581981-13582194)
chr5 (580-763)||(7805669-7805867)
chr5 (526-580)||(27945667-27945721)
chr5 (526-580)||(32973326-32973380)
chr5 (526-580)||(40891837-40891891)
chr5 (527-580)||(29616494-29616547)
[»] chr4 (14 HSPs)
chr4 (580-721)||(653640-653782)
chr4 (579-772)||(10119805-10120013)
chr4 (526-580)||(3530231-3530285)
chr4 (526-580)||(8994799-8994853)
chr4 (526-580)||(13113577-13113631)
chr4 (526-580)||(34434504-34434558)
chr4 (526-580)||(34463511-34463565)
chr4 (526-580)||(56054336-56054390)
chr4 (580-721)||(24490746-24490882)
chr4 (526-580)||(3615220-3615274)
chr4 (526-580)||(33607062-33607116)
chr4 (526-580)||(16171824-16171878)
chr4 (527-579)||(28447291-28447343)
chr4 (526-576)||(28901037-28901087)
[»] chr1 (21 HSPs)
chr1 (579-777)||(10106622-10106836)
chr1 (580-777)||(13891386-13891598)
chr1 (580-721)||(31289407-31289547)
chr1 (580-773)||(38734711-38734919)
chr1 (580-772)||(26650428-26650632)
chr1 (575-721)||(14582400-14582546)
chr1 (578-772)||(39746672-39746880)
chr1 (526-579)||(51523355-51523408)
chr1 (580-674)||(5602170-5602264)
chr1 (526-580)||(8471343-8471397)
chr1 (526-580)||(48385151-48385205)
chr1 (526-580)||(2475095-2475149)
chr1 (526-580)||(48407414-48407468)
chr1 (528-580)||(45363057-45363109)
chr1 (526-580)||(17676282-17676336)
chr1 (526-580)||(33167300-33167354)
chr1 (726-774)||(19406341-19406390)
chr1 (528-580)||(47297522-47297574)
chr1 (726-772)||(14724894-14724940)
chr1 (526-567)||(18317727-18317768)
chr1 (686-723)||(19406287-19406324)
[»] chr8 (12 HSPs)
chr8 (580-777)||(19430614-19430826)
chr8 (580-777)||(19566763-19566975)
chr8 (580-777)||(19436056-19436268)
chr8 (580-777)||(19572205-19572417)
chr8 (580-775)||(13584753-13584968)
chr8 (579-775)||(33616063-33616273)
chr8 (526-580)||(15056660-15056714)
chr8 (526-580)||(30529598-30529652)
chr8 (579-698)||(31031231-31031350)
chr8 (526-577)||(38205192-38205243)
chr8 (526-580)||(1633380-1633434)
chr8 (526-580)||(1955255-1955309)
[»] chr3 (17 HSPs)
chr3 (580-763)||(13022645-13022842)
chr3 (580-777)||(53120102-53120314)
chr3 (580-775)||(33088616-33088826)
chr3 (580-775)||(38436270-38436480)
chr3 (529-580)||(26162503-26162554)
chr3 (526-580)||(6045304-6045358)
chr3 (526-580)||(10424628-10424682)
chr3 (526-580)||(35472249-35472303)
chr3 (526-580)||(43475503-43475557)
chr3 (528-580)||(49027382-49027434)
chr3 (526-580)||(30415432-30415486)
chr3 (649-721)||(26962676-26962748)
chr3 (633-676)||(20811109-20811152)
chr3 (535-577)||(42564026-42564068)
chr3 (649-721)||(11777226-11777298)
chr3 (526-580)||(4874079-4874133)
chr3 (526-580)||(33188040-33188094)
[»] chr2 (6 HSPs)
chr2 (580-775)||(42915146-42915356)
chr2 (526-579)||(6363478-6363531)
chr2 (526-580)||(4279180-4279234)
chr2 (526-580)||(7585505-7585559)
chr2 (580-772)||(5089666-5089872)
chr2 (526-580)||(7763144-7763198)
[»] chr7 (17 HSPs)
chr7 (580-721)||(33226971-33227113)
chr7 (580-721)||(9973921-9974062)
chr7 (580-721)||(24529042-24529183)
chr7 (526-580)||(32749006-32749060)
chr7 (580-775)||(28291842-28292052)
chr7 (526-580)||(40690378-40690432)
chr7 (580-772)||(7357920-7358127)
chr7 (529-580)||(26815178-26815229)
chr7 (529-580)||(32127218-32127269)
chr7 (526-580)||(22659960-22660014)
chr7 (526-578)||(42881650-42881702)
chr7 (526-580)||(36521542-36521596)
chr7 (526-580)||(40300874-40300928)
chr7 (732-763)||(33226922-33226953)
chr7 (580-622)||(10437414-10437456)
chr7 (580-622)||(10451124-10451166)
chr7 (726-775)||(24528973-24529023)
[»] scaffold0132 (2 HSPs)
scaffold0132 (580-721)||(2421-2562)
scaffold0132 (580-721)||(10381-10522)
[»] scaffold0011 (2 HSPs)
scaffold0011 (580-777)||(2207-2420)
scaffold0011 (580-721)||(7532-7674)
[»] scaffold0004 (1 HSPs)
scaffold0004 (529-580)||(105889-105940)
[»] scaffold0021 (1 HSPs)
scaffold0021 (526-580)||(110175-110229)
[»] scaffold1454 (1 HSPs)
scaffold1454 (526-580)||(324-378)
[»] scaffold0067 (1 HSPs)
scaffold0067 (649-707)||(33368-33426)


Alignment Details
Target: chr6 (Bit Score: 490; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Original strand, 24916079 - 24916643
Alignment:
Q  7 atatggatgctagtgcagttgtgcttcgattagtggcatttaaagatggtaatatgtccctgcaacaaaaacaaggaaaaaacattgctactaaagatct 106  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||            
T  24916079 atatggatgctagtgcagttgtgcttcgattagtggcatt-aaagatggtgatatgtccctgcaacaaaaacaaggaaaaaacattgctact-------- 24916169  T
Q  107 caaaaagttactcattcaagaaagacaacaactctccattagaaacacaaaccagccaggtttcttgaaaggaaagcaagtcaaagacatggccaggttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916170 caaaaagttactcattcaagaaagacaacaactctccattagaaacacaaaccagccaggtttcttgaaaggaaagcaagtcaaagacatggccaggttt 24916269  T
Q  207 cttcaaaatgaacaactgaagatatggatgaagataatctgtttggatcagaagcctatctgcttgggctaacaatcaagctattatgaatcatcatttg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24916270 cttcaaaatgaacaactgaagatatggatgaagataatctgtttggatcagaagcctatctgcttgggctaacaatcaagcta-tatgaatcatcatttg 24916368  T
Q  307 cttaggtttaactcttcccaatgtccaatccttttagaatttggctctaacatgtgttttgcaggttgagaaagaac-nnnnnnnnctacaattaagaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||    
T  24916369 cttaggtttaactcttcccaatgtccaatccttttagaattgggctctaacatgtgttttgcaggttgagaaagaacaaaaaaaaactacaattaagaga 24916468  T
Q  406 ctggaacgaatatggatgcaagacgaagatagtatagaagttgtgaaacaagcctggaatagtaatggtagtgaaaggattctttctctcaataacacta 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916469 ctggaacgaatatggatgcaagacgaagatagtatagaagttgtgaaacaagcctggaatagtaatggtagtgaaaggattctttctctcaataacacta 24916568  T
Q  506 ttgaagctattcatgattgaggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916569 ttgaagctattcatgattgaggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 24916643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 580 - 772
Target Start/End: Complemental strand, 19478931 - 19478726
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19478833  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttacaaaac 764  Q
    || ||  |||||||||||||||||||||| ||| ||||| ||             ||||| ||||||||||||||||||||||||||||||||||||||     
T  19478832 agccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa- 19478734  T
Q  765 atatatat 772  Q
    ||||||||    
T  19478733 atatatat 19478726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 580 - 720
Target Start/End: Original strand, 17289607 - 17289744
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  17289607 tgttggaacactagttgaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg--tgtgtgacttaaaaatgtcccacattggtg 17289702  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac 720  Q
    || ||  ||||| || ||||||||||||| ||| ||||||||    
T  17289703 agccacaccaacaagcaagtgtttatataagggtagagtgac 17289744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 12502074 - 12502020
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||    
T  12502074 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttcatccat 12502020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 18642354 - 18642300
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  18642354 ggttttgcattaaatttcaatcaatcatcctctgttccaaacaactttaatccat 18642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 34841576 - 34841522
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  34841576 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 34841522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 580
Target Start/End: Complemental strand, 12513154 - 12513101
Alignment:
Q  527 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||    
T  12513154 gttttgcctcaaatttcaatcacccatcctctgttccaaacaactttcatccat 12513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 720
Target Start/End: Complemental strand, 10485837 - 10485752
Alignment:
Q  633 taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgac 720  Q
    ||||||||||||||  |||| ||||||||||||| |||||||||  || ||  |||||||| ||||||||||||| ||| ||||||||    
T  10485837 taagaactagtgtg--tgtgagacttaaaaatgttccacattggtgagccacaccaactagcaagtgtttatataagggtagagtgac 10485752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 675
Target Start/End: Original strand, 14450649 - 14450691
Alignment:
Q  633 taagaactagtgtggttgtgtgacttaaaaatgtcccacattg 675  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  14450649 taagaactagtgtgagtgtgtgacttaaaaatgtcccacattg 14450691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 721
Target Start/End: Original strand, 17280926 - 17280998
Alignment:
Q  649 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    ||||||||||||||||||  ||||||||  || |||  ||||||| ||||||||||||| ||| |||||||||    
T  17280926 tgtgtgacttaaaaatgtttcacattggtgagccatatcaactagcaagtgtttatataagggtagagtgacc 17280998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 1e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 579 - 772
Target Start/End: Complemental strand, 14374918 - 14374710
Alignment:
Q  579 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14374918 atgttggaacactagttcaatctagtgagaagtttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 14374819  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    ||||| ||||||||||||||||||||||| ||||||||||||             ||||| |||||||||||||||||||||||||||||||||| ||||    
T  14374818 agtcaccccaactagaaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 14374719  T
Q  764 catatatat 772  Q
    |||||||||    
T  14374718 catatatat 14374710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 580 - 777
Target Start/End: Original strand, 13581981 - 13582194
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |    
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 13582080  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||             ||||| |||||||||||||||||||||||||||||||||| ||||    
T  13582081 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 13582180  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  13582181 catatatatcacgc 13582194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 580 - 763
Target Start/End: Complemental strand, 7805867 - 7805669
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||||  ||||| || ||||||||||||||||||||||||||||||||||||||||| |    
T  7805867 tgttggaacactagttcaatctagtgagaaaattgattgaggataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 7805768  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttacaaaa 763  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||             ||||| ||||||||||||||||||||||||||||||||||||||    
T  7805767 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 7805669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 27945721 - 27945667
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  27945721 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 27945667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 32973326 - 32973380
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  32973326 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 32973380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 40891891 - 40891837
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  40891891 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 40891837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 29616494 - 29616547
Alignment:
Q  527 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||||||||||||    
T  29616494 gttttgcctcaaatttcaatcactcatcctctattccaaacaactttaatccat 29616547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 653782 - 653640
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |    
T  653782 tgttggaacactagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 653683  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||    
T  653682 agtcaccccaactagtaagtgtttatataagggaagagtgacc 653640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 579 - 772
Target Start/End: Original strand, 10119805 - 10120013
Alignment:
Q  579 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 677  Q
    ||||||||||||||||| ||||| |||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||     
T  10119805 atgttggaacactagttgaatctcgtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggt 10119903  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaa 762  Q
     || ||  |||||||||||||||||||||| ||| ||||||||             ||||| |||||||||||||||||||||||||||||||||| |||    
T  10119904 gagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtacccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 10120003  T
Q  763 acatatatat 772  Q
    ||||||||||    
T  10120004 acatatatat 10120013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 3530231 - 3530285
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  3530231 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 3530285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 8994853 - 8994799
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  8994853 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 8994799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 13113631 - 13113577
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  13113631 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 13113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 34434504 - 34434558
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  34434504 ggttttgcatcaaatttcaatcacccatcctccgttccaaacaactttaatccat 34434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 34463511 - 34463565
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34463511 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 34463565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 56054390 - 56054336
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  56054390 ggttttgcctcaaatttcaatcatccatcctctgttccaaacaacttcaatccat 56054336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 24490882 - 24490746
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||    ||| |||||||||||||||| |||||      
T  24490882 tgttggaacactagttaaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg----tgtaacttaaaaatgtcccatattggag 24490789  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    || ||  |||||||| ||||||||||||| ||| |||||||||    
T  24490788 agccacaccaactagcaagtgtttatataagggtagagtgacc 24490746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 3615220 - 3615274
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  3615220 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 3615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 33607116 - 33607062
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||||||||||||    
T  33607116 ggttttgcatcaaatttcaatcagtcatcctctgttcaaaacaactttaatccat 33607062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 16171824 - 16171878
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| ||||||||||||||  |||||||| ||| |||||||||||||||||    
T  16171824 ggttttgcctcaaatttcaatcactcatcctctgttcaaaacaactttaatccat 16171878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 28447343 - 28447291
Alignment:
Q  527 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 579  Q
    |||||| |||||||||||||||  |||| ||| ||||||||||||||||||||    
T  28447343 gttttgtatcaaatttcaatcactcatcttctgttccaaacaactttaatcca 28447291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 576
Target Start/End: Complemental strand, 28901087 - 28901037
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaat 576  Q
    |||||||| ||||||||||||||  |||||||  |||||||||||||||||    
T  28901087 ggttttgcctcaaatttcaatcactcatcctcggttccaaacaactttaat 28901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 8e-51; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 579 - 777
Target Start/End: Complemental strand, 10106836 - 10106622
Alignment:
Q  579 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 677  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||     
T  10106836 atgttggaacactagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 10106737  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaa 762  Q
    |||||| ||||||||| ||||||||||||| ||| ||||||||             ||||| |||||||||||||||||||||||||||||||||| |||    
T  10106736 tagtcaccccaactagtaagtgtttatataaggggagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 10106637  T
Q  763 acatatatatcacgc 777  Q
    |||||||||||||||    
T  10106636 acatatatatcacgc 10106622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 13891598 - 13891386
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || |||||||||||||   ||||||||||||||||||||||||||||      
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtaagtgtgtgacttaaaaatgtcccacattggtg 13891500  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttg-ggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||||||||||||             |||||| |||||||||||||||||||||||||| |||||| ||||    
T  13891499 agccacaccaactagaaagtgtttatataagggaagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaatgcttacaaaaa 13891400  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  13891399 catatatatcacgc 13891386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 31289547 - 31289407
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggta 679  Q
    |||||||||||||||| |||||||||||||| |||||| |||| |  || |  ||||||||||||||  ||||||||||||||||||||||||||||  |    
T  31289547 tgttggaacactagttgaatctagtgagaaaattggataagaaaacacaatg-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 31289449  T
Q  680 gtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    | ||  |||||||||||||||||||||| ||| |||||||||    
T  31289448 gccacaccaactagaaagtgtttatataagggtagagtgacc 31289407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 580 - 773
Target Start/End: Complemental strand, 38734919 - 38734711
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||| |||||      
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccatattggtg 38734821  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             ||||| || ||||||||||||||||||||||||||||||| ||||    
T  38734820 agccacaccaactagaaagtgtttatataagggtagagtgaccttcaaaggtgtgcccttaggatacccacttttgtgaacgggtgaacgcttacaaaaa 38734721  T
Q  764 catatatatc 773  Q
    ||||||||||    
T  38734720 catatatatc 38734711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 580 - 772
Target Start/End: Original strand, 26650428 - 26650632
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 26650526  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttacaaaac 764  Q
    || ||   ||||||||||||| ||||||| ||| ||||||||             ||||| ||||||||||||||||||||||||||||||||||||||     
T  26650527 agccacatcaactagaaagtg-ttatataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa- 26650624  T
Q  765 atatatat 772  Q
    ||||||||    
T  26650625 atatatat 26650632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 575 - 721
Target Start/End: Complemental strand, 14582546 - 14582400
Alignment:
Q  575 atccatgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacat 673  Q
    |||| |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  |||||||||||||||||||||||||    
T  14582546 atccttgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 14582448  T
Q  674 tgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    |||  |  ||  ||||||||||| | |||||||| ||| |||||||||    
T  14582447 tggtgaaccacaccaactagaaattttttatataagggtagagtgacc 14582400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 578 - 772
Target Start/End: Original strand, 39746672 - 39746880
Alignment:
Q  578 catgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgg 676  Q
    |||||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||  || |||||    
T  39746672 catgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattgg 39746770  T
Q  677 gtagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttg-ggtacccacttttgtgaacgggtgaacgcttacaaa 762  Q
      || ||  |||||||||||||||||||||| ||| ||||| |||             ||||  |||||||||||||||||||| |||||||||||||||    
T  39746771 tgagccacaccaactagaaagtgtttatataagggtagagtaacctccaaggatgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaaa 39746870  T
Q  763 acatatatat 772  Q
    | ||||||||    
T  39746871 aaatatatat 39746880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 51523408 - 51523355
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 579  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  51523408 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatcca 51523355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 674
Target Start/End: Original strand, 5602170 - 5602264
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacatt 674  Q
    |||||||||||||||| ||| |||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||    
T  5602170 tgttggaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 5602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 8471397 - 8471343
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  8471397 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 8471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 48385151 - 48385205
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  48385151 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 48385205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 2475095 - 2475149
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  2475095 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 2475149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 48407468 - 48407414
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||||||||||||    
T  48407468 ggttttgcctcaaatttcaatcactcatcctctgttccaaacaactttaatccat 48407414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 45363109 - 45363057
Alignment:
Q  528 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||    
T  45363109 ttttgcatcaaattttaatcacccatcctctgttccaaacgactttaatccat 45363057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 17676282 - 17676336
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| || ||||||||||| ||||||    
T  17676282 ggttttgcctcaaatttcaatcacccatcctctgtttcaaacaacttttatccat 17676336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 33167354 - 33167300
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||| ||||||||||||||| | |||||||  ||||||||||||||||||||    
T  33167354 ggttttgaatcaaatttcaatcaccaatcctctaatccaaacaactttaatccat 33167300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 726 - 774
Target Start/End: Original strand, 19406341 - 19406390
Alignment:
Q  726 gggtacccacttttgtgaacgggtgaacgcttac-aaaacatatatatca 774  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  19406341 gggtacccactttcgtgaacggatgaacgcttacaaaaacatatatatca 19406390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 47297522 - 47297574
Alignment:
Q  528 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||| ||||||||||||||  |||||||| |||||||||||||| ||||||    
T  47297522 ttttgcctcaaatttcaatcactcatcctctgttccaaacaactttcatccat 47297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 772
Target Start/End: Complemental strand, 14724940 - 14724894
Alignment:
Q  726 gggtacccacttttgtgaacgggtgaacgcttacaaaacatatatat 772  Q
    ||||||||||||||| |||||||||| |||||| |||| ||||||||    
T  14724940 gggtacccacttttgggaacgggtgagcgcttagaaaatatatatat 14724894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 18317727 - 18317768
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaac 567  Q
    |||||||||||||||||||| || ||||||||| ||||||||    
T  18317727 ggttttgcatcaaatttcaaccacccatcctctgttccaaac 18317768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 723
Target Start/End: Original strand, 19406287 - 19406324
Alignment:
Q  686 ccaactagaaagtgtttatatacgggaagagtgacccc 723  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  19406287 ccaactagaaagtgtttatataagggtagagtgacccc 19406324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 19430826 - 19430614
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19430728  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggg-tacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             |||||||| ||||||||||||||||||||||||||||||| ||||    
T  19430727 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19430628  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  19430627 catatatatcacgc 19430614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 19566975 - 19566763
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19566877  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggg-tacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             |||||||| ||||||||||||||||||||||||||||||| ||||    
T  19566876 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19566777  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  19566776 catatatatcacgc 19566763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 19436268 - 19436056
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19436170  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| | ||||||             ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  19436169 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19436070  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  19436069 catatatatcacgc 19436056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 19572417 - 19572205
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19572319  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| | ||||||             ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  19572318 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19572219  T
Q  764 catatatatcacgc 777  Q
    ||||||||||||||    
T  19572218 catatatatcacgc 19572205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 580 - 775
Target Start/End: Complemental strand, 13584968 - 13584753
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag----cactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacatt 674  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||     ||| |  |||||| |||||||   |||||| ||||||||||||||||||    
T  13584968 tgttggaacactagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacatt 13584869  T
Q  675 gggtagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac- 759  Q
    ||  || ||  |||||||||||||||||||||||||| ||||||||             ||||| ||||||||||||||||||||||||||||||||||     
T  13584868 ggtgagccacaccaactagaaagtgtttatatacgggtagagtgacatccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttaca 13584769  T
Q  760 aaaacatatatatcac 775  Q
    ||||||||||||||||    
T  13584768 aaaacatatatatcac 13584753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 579 - 775
Target Start/End: Original strand, 33616063 - 33616273
Alignment:
Q  579 atgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 677  Q
    ||||||||||| ||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  | |||| |||||||||||| ||||||||     
T  33616063 atgttggaacattagttaaatctagtgagaaaattggataagaaaaatacaata-taagaactagtgtgagtatgtggcttaaaaatgtctcacattggt 33616161  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttgggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
     || ||  |||||||||||||||||||||| ||| ||||| |||             |||||||||||||||||| ||||||| ||||||||||| ||||    
T  33616162 gagccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttgggtacccacttttatgaacggatgaacgcttacaaaaa 33616261  T
Q  764 catatatatcac 775  Q
    ||||||||||||    
T  33616262 catatatatcac 33616273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 15056714 - 15056660
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  15056714 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatccat 15056660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 30529598 - 30529652
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30529598 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatccat 30529652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 698
Target Start/End: Complemental strand, 31031350 - 31031231
Alignment:
Q  579 atgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 677  Q
    ||||||||||||||||| |||||| ||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||| ||||||||     
T  31031350 atgttggaacactagttaaatctaatgagaaaattggataagaaaaacacatta-taagaactagtgtgagtgtgtgacttaaaaatgtctcacattggt 31031252  T
Q  678 tagtcatcccaactagaaagt 698  Q
     || ||  |||||||||||||    
T  31031251 gagccacaccaactagaaagt 31031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 526 - 577
Target Start/End: Original strand, 38205192 - 38205243
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatc 577  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  38205192 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatc 38205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 1633380 - 1633434
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  1633380 ggttttgcatcaaatttcactcacccattctcttttccaaacaactttaatccat 1633434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 1955255 - 1955309
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  1955255 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 1955309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 580 - 763
Target Start/End: Complemental strand, 13022842 - 13022645
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 13022744  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------cctt-gggtacccacttttgtgaacgggtgaacgcttacaaaa 763  Q
    || ||  |||| ||||||||||||||||| |||||||||||||             |||| ||||||||||||||||||||||||||||||||||||||    
T  13022743 agccacaccaattagaaagtgtttatataagggaagagtgacctccaagggtgtgaccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 13022645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 53120314 - 53120102
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 53120216  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| | ||||||             ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  53120215 agccacaccaactagaaagtgtttatataagggtacagtgacctccaagggtgtgcccttggggtacccacttttgtgaacaggtgaacgcttacaaaaa 53120116  T
Q  764 catatatatcacgc 777  Q
     |||||||||||||    
T  53120115 tatatatatcacgc 53120102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 580 - 775
Target Start/End: Original strand, 33088616 - 33088826
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||  |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  33088616 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 33088714  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             ||||| |||||||||||||| | ||||||||||||||||| ||||    
T  33088715 agccaaaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttataaacgggtgaacgcttacaaaaa 33088814  T
Q  764 catatatatcac 775  Q
    ||||||||||||    
T  33088815 catatatatcac 33088826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 580 - 775
Target Start/End: Original strand, 38436270 - 38436480
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    ||||||| ||| |||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||   |||||||||||||||||||||||||||      
T  38436270 tgttggagcaccagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacattggtg 38436368  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacccc--------------ttgggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||   |||||| |||||||||||||| ||| ||||||||| |              | |||||||||||||||||||||||||||||||||| ||||    
T  38436369 agccacatcaactaaaaagtgtttatataagggtagagtgaccaccaaaggtgtgctcttagggtacccacttttgtgaacgggtgaacgcttacaaaaa 38436468  T
Q  764 catatatatcac 775  Q
    ||||||||||||    
T  38436469 catatatatcac 38436480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 26162503 - 26162554
Alignment:
Q  529 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26162503 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 26162554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 6045304 - 6045358
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  6045304 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 6045358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 10424628 - 10424682
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  10424628 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 10424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 35472249 - 35472303
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  35472249 ggttttgcatcaaattttaatcacccatcctcttttccaaaccactttaatccat 35472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 43475557 - 43475503
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  43475557 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 43475503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 49027382 - 49027434
Alignment:
Q  528 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  49027382 ttttgcatcaaatttcaatcacctatcctctgttccaaacaactttaatccat 49027434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 30415432 - 30415486
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  30415432 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 30415486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 721
Target Start/End: Complemental strand, 26962748 - 26962676
Alignment:
Q  649 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    ||||||||||||||| ||| ||||||||  || ||  |||||||||||||||||||||| ||| |||||||||    
T  26962748 tgtgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacc 26962676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 20811152 - 20811109
Alignment:
Q  633 taagaactagtgtggttgtgtgacttaaaaatgtcccacattgg 676  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  20811152 taagaactagtgtgagtgtgtgacttaaaaatgtcccacattgg 20811109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 42564068 - 42564026
Alignment:
Q  535 tcaaatttcaatcatccatcctcttttccaaacaactttaatc 577  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  42564068 tcaaatttcaatcacccatcctctgttccaaacaactttaatc 42564026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 721
Target Start/End: Complemental strand, 11777298 - 11777226
Alignment:
Q  649 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    ||||||||||||||||||||||||||||  || ||  | |||||| ||||||||||||| ||| || ||||||    
T  11777298 tgtgtgacttaaaaatgtcccacattggtgagccacactaactagcaagtgtttatataagggtagggtgacc 11777226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 4874079 - 4874133
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| ||||||||||||||  |||||||| ||| |||||||||| ||||||    
T  4874079 ggttttgcctcaaatttcaatcactcatcctctgttctaaacaacttttatccat 4874133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 33188040 - 33188094
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| ||||||||||||||  | |||||| |||||||||||||| ||||||    
T  33188040 ggttttgcctcaaatttcaatcactcttcctctgttccaaacaacttttatccat 33188094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 580 - 775
Target Start/End: Complemental strand, 42915356 - 42915146
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 42915258  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------ccctt-gggtacccacttttgtgaacgggtgaacgcttacaaaa- 763  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             ||||| |||||||||||||||||||||||||||||||| |||||     
T  42915257 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttgcaaaag 42915158  T
Q  764 catatatatcac 775  Q
     |||||||||||    
T  42915157 tatatatatcac 42915146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 6363531 - 6363478
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 579  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  6363531 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatcca 6363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 4279234 - 4279180
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  4279234 ggttttgcatcaaatttcaatcactcatcctctgttccaaacaactttaatccat 4279180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 7585505 - 7585559
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  7585505 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 7585559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 772
Target Start/End: Complemental strand, 5089872 - 5089666
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 677  Q
    ||||| |||||||||| ||| |||||||||| |||||| |||| || ||| |  ||||||||||||||  || | |||||||||| |||||||||||||     
T  5089872 tgttgaaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacattggt 5089774  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttg-ggtacccacttttgtgaacgggtgaacgcttacaaaa 763  Q
     || ||  |||| ||||||||||||||||| ||  ||||||||             ||||||  ||||||||||||||||||||||||||||||||||||    
T  5089773 gagccacaccaattagaaagtgtttatataaggatagagtgacctctaagggtgtgcccttgatgtacccacttttgtgaacgggtgaacgcttacaaaa 5089674  T
Q  764 catatatat 772  Q
     ||||||||    
T  5089673 -atatatat 5089666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 7763144 - 7763198
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||| |||||||||| ||||| ||||||| | |||||||||||||||||||||    
T  7763144 ggttttacatcaaattttaatcacccatcctttgttccaaacaactttaatccat 7763198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 33227113 - 33226971
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| || | || ||| |  ||||||||||||||  |||||||||||||||||| |||||||||      
T  33227113 tgttggaacactagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacattggtg 33227014  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    |||||  |||||||||||||||||||||| ||| |||||||||    
T  33227013 agtcacaccaactagaaagtgtttatataagggtagagtgacc 33226971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 9974062 - 9973921
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||| ||||  ||||||||||||||||||||||||||||      
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattggtg 9973964  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    || ||  ||||||||||| |||| ||||| ||| |||||||||    
T  9973963 agccacaccaactagaaattgttaatataagggtagagtgacc 9973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 24529183 - 24529042
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagc-actactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||   | || ||||||||||||||  |||||||||||||||| ||| |||||||      
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacataata-taagaactagtgtgagtgtgtgacttaaaaatatcctacattggtg 24529085  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    || ||  |||||||||||||||||||||| ||| |||||||||    
T  24529084 agccacaccaactagaaagtgtttatataagggtagagtgacc 24529042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 32749060 - 32749006
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32749060 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 32749006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 580 - 775
Target Start/End: Original strand, 28291842 - 28292052
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||| | ||||| |||||| |||| ||  || || ||||||||||||||   ||||||||||||||||||||| |||||      
T  28291842 tgttggaacactagttaaatctaattagaaaattggataagaaaaacacaata-taagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtg 28291940  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggg-tacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    ||  |  |||||||||||||||||||||| ||| | |||||||             ||||||| ||||||||||||||||||||||||||||||| ||||    
T  28291941 agctacaccaactagaaagtgtttatataagggtatagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 28292040  T
Q  764 catatatatcac 775  Q
    ||||||||||||    
T  28292041 catatatatcac 28292052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 40690432 - 40690378
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40690432 ggttttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 40690378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 580 - 772
Target Start/End: Complemental strand, 7358127 - 7357920
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||  ||||||| |||||| |||| ||  || | | |||||||||||||   ||||||||||||||||||||| |||||      
T  7358127 tgttggaacactagttgaatcttttgagaaaattggataagaaaaacacaatgc-aagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtg 7358029  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttg-ggtacccacttttgtgaacgggtgaacgcttac-aaaa 763  Q
    || ||  |||| ||||||||||||||||| ||| ||||||||             |||||| ||||||||||||||||||||||||||||||||| ||||    
T  7358028 agccacaccaattagaaagtgtttatataagggtagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaacgcttacaaaaa 7357929  T
Q  764 catatatat 772  Q
    |||||||||    
T  7357928 catatatat 7357920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 580
Target Start/End: Complemental strand, 26815229 - 26815178
Alignment:
Q  529 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26815229 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 26815178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 32127218 - 32127269
Alignment:
Q  529 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32127218 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 32127269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 22660014 - 22659960
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  22660014 ggttttgcttcaaatttcaatcatccatcctctgttccaaacaactttaatccat 22659960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 526 - 578
Target Start/End: Complemental strand, 42881702 - 42881650
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcc 578  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  42881702 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatcc 42881650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 36521596 - 36521542
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  36521596 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 36521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 40300874 - 40300928
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||| | |||||||||||||| | ||||||| |||||||||||||||||||||    
T  40300874 ggttttacctcaaatttcaatcacctatcctctgttccaaacaactttaatccat 40300928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 732 - 763
Target Start/End: Complemental strand, 33226953 - 33226922
Alignment:
Q  732 ccacttttgtgaacgggtgaacgcttacaaaa 763  Q
    ||||||||||||||||||||||||||||||||    
T  33226953 ccacttttgtgaacgggtgaacgcttacaaaa 33226922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 622
Target Start/End: Complemental strand, 10437456 - 10437414
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaa 622  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  10437456 tgttggaacactagttgaatctagtgagaaaattggataagaa 10437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 622
Target Start/End: Complemental strand, 10451166 - 10451124
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaa 622  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  10451166 tgttggaacactagttgaatctagtgagaaaattggataagaa 10451124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 775
Target Start/End: Complemental strand, 24529023 - 24528973
Alignment:
Q  726 gggtacccacttttgtgaacgggtgaacgcttac-aaaacatatatatcac 775  Q
    |||||||||||||| ||||||| ||||||||| | ||||||||||||||||    
T  24529023 gggtacccacttttatgaacggatgaacgcttgcaaaaacatatatatcac 24528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 580 - 721
Target Start/End: Original strand, 2421 - 2562
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||||||||       
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 2519  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    || ||  ||||||||||||| |||||||| ||| |||||||||    
T  2520 agccacaccaactagaaagtatttatataagggtagagtgacc 2562  T

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Target: scaffold0132; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 580 - 721
Target Start/End: Original strand, 10381 - 10522
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 678  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||||||||       
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 10479  T
Q  679 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
    || ||  ||||||||||||| |||||||| ||| |||||||||    
T  10480 agccacaccaactagaaagtatttatataagggtagagtgacc 10522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 580 - 777
Target Start/End: Complemental strand, 2420 - 2207
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaa-gaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 677  Q
    |||||||||||||||| || ||||||||||| |||||| |||| || ||| |  || |||||||||||  ||||||||||||||| |||||||||||||     
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 2322  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggg-tacccacttttgtgaacgggtgaacgcttac-aaa 762  Q
     || ||  |||||||||||||||||||||| ||| |  ||||||             ||||||| ||||||||||||||||||| ||||||||||| |||    
T  2321 gagccacaccaactagaaagtgtttatataagggtattgtgacctccaagggtgtgcccttggggtacccacttttgtgaacggatgaacgcttacaaaa 2222  T
Q  763 acatatatatcacgc 777  Q
    |||||||||||||||    
T  2221 acatatatatcacgc 2207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 580 - 721
Target Start/End: Complemental strand, 7674 - 7532
Alignment:
Q  580 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaa-gaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 677  Q
    |||||||||||||||| || ||||||||||| |||||| |||| || ||| |  || |||||||||||  ||||||||||||||| |||||||||||||     
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 7576  T
Q  678 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc 721  Q
     || ||  |||||||||||||||||||||| ||| || ||||||    
T  7575 gagccacaccaactagaaagtgtttatataagggtagtgtgacc 7532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 580
Target Start/End: Complemental strand, 105940 - 105889
Alignment:
Q  529 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  105940 tttgcatcaaatttcaatcacccatcctcttttcctaacaactttaatccat 105889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 110175 - 110229
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  110175 ggttttgcatcaaatttcaatcactcatcctctgttccaaacaactttaatccat 110229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 378 - 324
Alignment:
Q  526 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 580  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  378 ggttttgcattaaatttcaatcaatcatcctctgttccaaacaactttaatccat 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 707
Target Start/End: Original strand, 33368 - 33426
Alignment:
Q  649 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatata 707  Q
    |||||||||||||||||||||||||||   || ||  |||||||| |||||||||||||    
T  33368 tgtgtgacttaaaaatgtcccacattgatgagccacaccaactagcaagtgtttatata 33426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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