View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12511_high_1 (Length: 768)

Name: NF12511_high_1
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12511_high_1
NF12511_high_1
[»] chr1 (9 HSPs)
chr1 (320-761)||(48043874-48044346)
chr1 (19-235)||(48043525-48043734)
chr1 (19-230)||(48051491-48051701)
chr1 (559-678)||(48051839-48051958)
chr1 (146-223)||(48056891-48056968)
chr1 (19-113)||(48056743-48056836)
chr1 (167-234)||(48045485-48045552)
chr1 (280-318)||(48043794-48043832)
chr1 (484-543)||(48057247-48057306)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 320 - 761
Target Start/End: Original strand, 48043874 - 48044346
Alignment:
Q  320 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaa-tggatgataattgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48043874 aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaaatggatgataattgt 48043973  T
Q  419 cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagt----------ttcgattacaagtttgtaacaacattgatgtga 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||||||||||||||||||||||||||||||    
T  48043974 cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagtaggtgctccttccgattacaagtttgtaacaacattgatgtga 48044073  T
Q  509 caatatcgtcttaatagttttcacattgatgcaattgattctattt--------------------gtgatgcagattgtgacatgccatttggtgacgt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||    
T  48044074 caatatcgtcttaatagttttcacattgatgcaattgattctatttgtagctttcggaggggatttgtgatgcagattgtgacatgccatttggtgacgt 48044173  T
Q  589 gacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgctaatttgatttgaata 688  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48044174 gccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgcttatttgatttgaata 48044273  T
Q  689 attctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgcttctcca 761  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48044274 attctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctcca 48044346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 48043525 - 48043734
Alignment:
Q  19 atcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctgnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||         
T  48043525 atcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatgga--------gcacatcctgaaaaa 48043616  T
Q  119 nngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctag 217  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48043617 aagcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctag 48043716  T
Q  218 aaccagcagtggaatccc 235  Q
    ||||||||||||||||||    
T  48043717 aaccagcagtggaatccc 48043734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 48051491 - 48051701
Alignment:
Q  19 atcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctgnnnnn 118  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||| || |||||||  |||||||||         
T  48051491 atcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacacatcctgattaa 48051590  T
Q  119 nngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctaga 218  Q
      || ||  ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  48051591 aagctaaaattt-gaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttaga 48051689  T
Q  219 accagcagtgga 230  Q
    ||||||||||||    
T  48051690 accagcagtgga 48051701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 559 - 678
Target Start/End: Original strand, 48051839 - 48051958
Alignment:
Q  559 tgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagg 658  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||   |||||||||| |||| |||||    
T  48051839 tgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagg 48051938  T
Q  659 gagataggtcacgctaattt 678  Q
    ||||||| ||| ||||||||    
T  48051939 gagatagatcatgctaattt 48051958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
Q  146 acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag 223  Q
    ||||| |||||| ||||||| ||||  |||||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  48056891 acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag 48056968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 48056743 - 48056836
Alignment:
Q  19 atcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctg 113  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||| || |  || |||||||||||||| ||||| ||||||||| |||||||||||    
T  48056743 atcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctg 48056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
Q  167 tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc 234  Q
    |||| ||||||||||||||||||   ||||||||||||| |||||||||| |||||||| | ||||||    
T  48045485 tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc 48045552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
Q  280 ggaattgaatctgagatcacccttatcactccattcttt 318  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  48043794 ggaatcgaatctgagatcacccttatcactccattcttt 48043832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 543
Target Start/End: Original strand, 48057247 - 48057306
Alignment:
Q  484 caagtttgtaacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaat 543  Q
    ||||||||  |||| |||||||  |||||||| || ||||||||||||||||||||||||    
T  48057247 caagtttgctacaaaattgatgaaacaatatcatcctaatagttttcacattgatgcaat 48057306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University