View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_high_18 (Length: 276)
Name: NF12511_high_18
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 3446542 - 3446694
Alignment:
| Q |
125 |
cactgaagttggttctctactcactagca------tgatgagtttattaacatgtccaatattttacgtctatagggcaccactaaaattgattctcaga |
218 |
Q |
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| T |
3446542 |
cactgaagttggttctctactcacaagcatgagcatgatgagtttattaacatgtccaatattttacgtctatagggcaccactaaaattggttctcaga |
3446641 |
T |
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| Q |
219 |
caacattttgtcttattaaaaggacaaaatatcttcttatctgatgatgtcca |
271 |
Q |
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| T |
3446642 |
caacattttgtcttattaaaaggacaaaatatcttcttatctgattatgtcca |
3446694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 3446407 - 3446480
Alignment:
| Q |
16 |
acatcactggcatcattatcagttgaaaactcaaattagcagtggaacttgaatttagagacaggtccatcttg |
89 |
Q |
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| T |
3446407 |
acatcactggcatcattatcagttgaaaactcaaattagcagtggaacttgaatttagagaccggtccatcttg |
3446480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 3446503 - 3446543
Alignment:
| Q |
16 |
acatcactggcatcattatcagttgaaaactcaaattagca |
56 |
Q |
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| T |
3446503 |
acatcactggcatcattatcagttgaaaactcaaattagca |
3446543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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