View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_high_5 (Length: 384)
Name: NF12511_high_5
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 51106530 - 51106165
Alignment:
| Q |
13 |
ttcactgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcatt |
112 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51106530 |
ttcagtgggctgcactcaacaaccaaacttctgttgctaagtacatcattgatcatggtggagatataaatgcaaaagatcgtagtggctagacagcatt |
51106431 |
T |
|
| Q |
113 |
gcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaata |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106430 |
gcattggagtgccgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaata |
51106331 |
T |
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| Q |
213 |
catgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106330 |
catgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccat |
51106231 |
T |
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| Q |
313 |
tgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtccatc |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51106230 |
tgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatgtacatc |
51106165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 51115866 - 51115508
Alignment:
| Q |
13 |
ttcactgggctgcactcaacaaccagacttctgttgctaagtacatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcatt |
112 |
Q |
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| T |
51115866 |
ttcagtgggctgcactcaacaaccatactgctgttgctcagtacatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaacggcatt |
51115767 |
T |
|
| Q |
113 |
gcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaata |
212 |
Q |
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|||||||||||| || || |||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |
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| T |
51115766 |
gcattggagtgcggttcgaggttgtattgaggttgcagagcttttactcaaagagggtgctgaattgaattctgctgacaagtatgggtatcagacaaca |
51115667 |
T |
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| Q |
213 |
catgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccat |
312 |
Q |
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|||||||| |||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||| | |
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| T |
51115666 |
catgttgcagctcaatatggtcatacagctttcctttaccatcttgtttcaaaatggaacgctgagcctgatgttcctgataatgaaggaagaagcccct |
51115567 |
T |
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| Q |
313 |
tgcattgggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgat |
371 |
Q |
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||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||| |
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| T |
51115566 |
tgcattgggctgcttacaaaggttttgctgattttatatgtcttctgttatttcttgat |
51115508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 48033760 - 48033900
Alignment:
| Q |
66 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
165 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
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| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
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| Q |
166 |
agggtgctcaattgaattctgctgacaaggatgggtatcag |
206 |
Q |
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| T |
48033860 |
agggtgctcgagtgaacgctgctgacatgaatgggtatcag |
48033900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 48034113 - 48034221
Alignment:
| Q |
212 |
acatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagccca |
311 |
Q |
| |
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|||||||||||||||||||| ||| || ||||||||||| | || ||||||||||||||||||||||||| | || |||||| ||||||||| |||| |
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| T |
48034113 |
acatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaagatgcccc |
48034212 |
T |
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| Q |
312 |
ttgcattgg |
320 |
Q |
| |
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||||||||| |
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| T |
48034213 |
ttgcattgg |
48034221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 48035932 - 48035985
Alignment:
| Q |
319 |
gggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatg |
372 |
Q |
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||||||||| |||||||||| |||||| || |||||||||||||||||||||| |
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| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatg |
48035985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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