View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_high_7 (Length: 358)
Name: NF12511_high_7
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 33485727 - 33485463
Alignment:
| Q |
20 |
cttagttgcacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttgtggtggagat |
119 |
Q |
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| T |
33485727 |
cttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttgtggtggagat |
33485628 |
T |
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| Q |
120 |
attgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgatt |
219 |
Q |
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| T |
33485627 |
attgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgatt |
33485528 |
T |
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| Q |
220 |
catagggatgccactgtgagttgatcacagatgactcactccctaatggggatacagatttgagc |
284 |
Q |
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| T |
33485527 |
catagggatgccactgtgagttgatcacagatgactcactcccaagtggggatacagatttgagc |
33485463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 33498938 - 33498674
Alignment:
| Q |
20 |
cttagttgcacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttgtggtggagat |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33498938 |
cttagttgaacaaatgcaaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttgtggtggagat |
33498839 |
T |
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| Q |
120 |
attgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33498838 |
attgaaaatgcatttgaaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgatt |
33498739 |
T |
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| Q |
220 |
catagggatgccactgtgagttgatcacagatgactcactccctaatggggatacagatttgagc |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
33498738 |
catagggatgccactgtgagttgatcacagatgactcactcccaagtggggatacagatttgagc |
33498674 |
T |
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