View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_10 (Length: 353)
Name: NF12511_low_10
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 40624283 - 40623956
Alignment:
| Q |
12 |
gttcactgctttgtaacattagtttctctaaattgtttgttttcatattttccatttactatgagatata---tgcagattccatagcggttacaaccta |
108 |
Q |
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| T |
40624283 |
gttctctgctttgtaacattagtttctctaaattgtttgttttcatattttccatttactatgagatataatatgcagattccatagcggttacaaccta |
40624184 |
T |
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| Q |
109 |
catgtttacatgcttatctgcagtatttaatcatatatctttagaattttatcagacattgtttacaattatgtatctctttgcctttacnnnnnnnnnn |
208 |
Q |
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| T |
40624183 |
catgtttacatgcttatctgcagtatttaatcata------tagaattttatcagacattgtttacaattatgtatctctttgcctttacttttttgttt |
40624090 |
T |
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| Q |
209 |
nnnnnnnnnnnnnncctaccaagttaaatattgaatggagagcataattgcttttttcttcgaagagttggaatttctcacaattgtctacaggcagcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40624089 |
tgtttttaagttttcctaccaagttaaatattgaatggagagcataattgattttttcttcgaagagttggaatttctcacaattgtctacaggcagcat |
40623990 |
T |
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| Q |
309 |
atttgttgtatatttgattgattatgatgtccat |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40623989 |
atttgttgtatatttgattgattatgatgtccat |
40623956 |
T |
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