View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_11 (Length: 352)
Name: NF12511_low_11
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 41763258 - 41763045
Alignment:
| Q |
12 |
atggacatcatgggccaagacaaggctttgggcccatttgaacgatttgatatatataccccaccaataaaataaactttgttgtatatataccccctat |
111 |
Q |
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| T |
41763258 |
atggacatcatgggccaagacaaggatttgggcccatttgtacgatttgatatatataccccaccaataaaataaact--gttgtatatataccccctat |
41763161 |
T |
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| Q |
112 |
gaaaaaattacggacctaagccttcggccgtcacactccccacctatgcgtagggtcagccctgcattttgctccccaaatttgagttttcttcggaggg |
211 |
Q |
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| T |
41763160 |
aaaaaaattatggacctaagccttcggccgtcgcactccccacctatgcgtagggtcagccctgcattttgctccccaaatttgagttttcttcggaggg |
41763061 |
T |
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| Q |
212 |
gaaagaatgtacgttg |
227 |
Q |
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| T |
41763060 |
gaaagaatgtacgttg |
41763045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 41762992 - 41762927
Alignment:
| Q |
280 |
caaagttgtccttactaaatttttgttacccgtcttgaccttcatgtacgtcgtccttctctgctt |
345 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41762992 |
caaagttgtccttactgaatttttgttacctgtcttgaccttcatgtacgtcgtccttctctgctt |
41762927 |
T |
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