View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_12 (Length: 352)
Name: NF12511_low_12
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_12 |
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| [»] chr2 (6 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 5388388 - 5388739
Alignment:
| Q |
1 |
caaatattaaagtgatgaatttcatatactttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaaatactttagagattaaa |
100 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388388 |
caaagattaaagtgacgaatttcatatactttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaaatactttagagattaaa |
5388487 |
T |
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| Q |
101 |
ttaattgttgtgaatttaaatatggaatcaatgttaaaataaattggtttgatttgtattatgttgaatgtagttggtagcagaggtggtagggacgtac |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388488 |
ttaattattgtgaatttaaatatggaatcaatgttaaaataaattggtttgatttgtattatgttgaatgtagttggtagcagaggtggtagggacgtac |
5388587 |
T |
|
| Q |
201 |
ttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388588 |
ttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgtta |
5388687 |
T |
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| Q |
301 |
tggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5388688 |
tggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgc |
5388739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 150 - 352
Target Start/End: Original strand, 5402346 - 5402548
Alignment:
| Q |
150 |
tgatttgtattatgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatg |
249 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5402346 |
tgatttgtattatgttggatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatg |
5402445 |
T |
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| Q |
250 |
acaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5402446 |
acaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccc |
5402545 |
T |
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| Q |
350 |
tgc |
352 |
Q |
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||| |
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| T |
5402546 |
tgc |
5402548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5402224 - 5402326
Alignment:
| Q |
1 |
caaatattaaagtgatgaatttcatatactttaaaaatgtttattacttttatatgctttaaagatttaattagagagaaaaaatactttagagattaaa |
100 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |
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| T |
5402224 |
caaagattaaagtgacgaatttcatatactttaaaaatgtttattacttttatatgctttagagattgaattagagag-aaaaatactttagagattaaa |
5402322 |
T |
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| Q |
101 |
ttaa |
104 |
Q |
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|||| |
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| T |
5402323 |
ttaa |
5402326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 175 - 352
Target Start/End: Original strand, 5415106 - 5415283
Alignment:
| Q |
175 |
tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat |
274 |
Q |
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|||||||||| ||||| || || ||| | |||||||||| || |||||||||||| | ||||||||| ||||||| | |||||||||| |||||| || |
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| T |
5415106 |
tggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat |
5415205 |
T |
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| Q |
275 |
ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgc |
352 |
Q |
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|| ||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5415206 |
tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgc |
5415283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 346
Target Start/End: Original strand, 5396658 - 5396842
Alignment:
| Q |
162 |
tgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaa |
261 |
Q |
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|||||||| |||||||||||||| ||||| || || | ||||||||||||||| || ||||||||||| |||||||| ||| ||||||| ||||| || | |
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| T |
5396658 |
tgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtga |
5396757 |
T |
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| Q |
262 |
cacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaa |
346 |
Q |
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||| |||||| || |||||||||||||| || |||||||||| || || || ||| | ||||| |||||||||||||||||||| |
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| T |
5396758 |
cacttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttcaa |
5396842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 346
Target Start/End: Complemental strand, 5408120 - 5407936
Alignment:
| Q |
162 |
tgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaa |
261 |
Q |
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|||||| | |||||||||||||| ||||| | || | ||||||||||||||| || |||| | |||| |||||||| ||| ||||||| ||||| || | |
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| T |
5408120 |
tgttgagtatagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtga |
5408021 |
T |
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| Q |
262 |
cacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaa |
346 |
Q |
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||| |||||| || ||||||||||||| || ||||||||| || || || ||| | ||||| ||||||||||| |||||||| |
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| T |
5408020 |
cacttcctggaattgcaattgtttggggacttgttgttatggtattagtctattctataggtcatatctctggtgcccatttcaa |
5407936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 352
Target Start/End: Original strand, 36267554 - 36267734
Alignment:
| Q |
172 |
agttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgg |
271 |
Q |
| |
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|||||||||| |||||| |||| || || |||||||||||||| || |||||| | || ||||||| ||||||| || || ||||||| |||||| |
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| T |
36267554 |
agttggtagctgaggtgataggcacatatttcttgatatttgccggttgtgcttcggtgttggtgaacaagaacaatgaaaatgttgtaacacttcctgg |
36267653 |
T |
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| Q |
272 |
gatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgc |
352 |
Q |
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|| |||||||||||||| || |||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
36267654 |
aatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatttcaatcctgc |
36267734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 352
Target Start/End: Original strand, 36262464 - 36262573
Alignment:
| Q |
243 |
gacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatt |
342 |
Q |
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||||| ||||| |||||||||| ||| ||||| ||||||||||||| || ||| | |||| ||| |||||||| ||||||| |||||||||||||||| |
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| T |
36262464 |
gacaacgacaacgtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatt |
36262563 |
T |
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| Q |
343 |
tcaaccctgc |
352 |
Q |
| |
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|||| ||||| |
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| T |
36262564 |
tcaatcctgc |
36262573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 33127776 - 33127831
Alignment:
| Q |
297 |
gttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgc |
352 |
Q |
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|||||| | |||||||| ||| ||||||||||||||||||| |||||||| ||||| |
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| T |
33127776 |
gttatgatcttggtttattctcttggtcacatctctggtgcccatttcaatcctgc |
33127831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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