View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12511_low_14 (Length: 333)

Name: NF12511_low_14
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12511_low_14
NF12511_low_14
[»] chr8 (1 HSPs)
chr8 (34-324)||(29052618-29052908)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 29052618 - 29052908
Alignment:
Q  34 agagagtttctccatgtgaagccacttccactttcaccaaacatagcaaaaaatttgaaaaactgtaaactcacacacccttttgctagcttatcatctt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29052618 agagagtttctccatgtgaagccacttccactttcaccaaacatagcaaaaaatttgaaaaactgtaaactcacacacccttttgctagcttatcatctt 29052717  T
Q  134 ttgcagaagcagaaggagaagagggttcaaaagaagaaattcagctcaatgaacatcaccaacatgctgcaacagaaaacggagagaataatgatgaagt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29052718 ttgcagaagcagaaggagaagagggttcaaaagaagaaattcagctcaatgaacatcaccaacatgctgcaacagaaaacggggagaataatgatgaagt 29052817  T
Q  234 atcaggaatggctaaagcatttcacatatcatcaagaacagcttctgctataacaatatgtatagtaatggctgcacttgtttttcctttg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29052818 atcaggaatggctaaagcatttcacatatcatcaagaacagcttctgctataacaatatgtatagtaatggctgcacttgtttttcctttg 29052908  T

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