View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12511_low_15 (Length: 331)

Name: NF12511_low_15
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12511_low_15
NF12511_low_15
[»] chr7 (7 HSPs)
chr7 (20-132)||(29617802-29617914)
chr7 (133-187)||(223552-223607)
chr7 (148-183)||(26253085-26253120)
chr7 (133-197)||(9939426-9939491)
chr7 (133-197)||(10027618-10027683)
chr7 (133-197)||(29241530-29241595)
chr7 (134-197)||(36698744-36698808)
[»] chr6 (4 HSPs)
chr6 (133-196)||(24608306-24608371)
chr6 (133-197)||(30124176-30124240)
chr6 (148-197)||(11574463-11574512)
chr6 (130-180)||(30832685-30832735)
[»] chr4 (11 HSPs)
chr4 (131-188)||(3850593-3850651)
chr4 (130-183)||(16924662-16924715)
chr4 (133-193)||(31984820-31984881)
chr4 (148-197)||(979385-979434)
chr4 (138-180)||(40089330-40089372)
chr4 (133-180)||(38352507-38352554)
chr4 (216-246)||(3850680-3850710)
chr4 (132-197)||(25887285-25887351)
chr4 (133-197)||(29690934-29690999)
chr4 (148-197)||(45996891-45996940)
chr4 (148-188)||(7443710-7443750)
[»] chr3 (3 HSPs)
chr3 (133-197)||(11467757-11467822)
chr3 (133-197)||(25373625-25373690)
chr3 (148-187)||(40740227-40740266)
[»] chr8 (8 HSPs)
chr8 (131-197)||(45294580-45294647)
chr8 (136-197)||(4322486-4322548)
chr8 (148-197)||(1176226-1176275)
chr8 (133-197)||(33978655-33978720)
chr8 (148-197)||(7587911-7587960)
chr8 (148-197)||(9491942-9491991)
chr8 (133-197)||(15270126-15270191)
chr8 (133-197)||(33963498-33963563)
[»] chr5 (6 HSPs)
chr5 (133-197)||(31068109-31068174)
chr5 (148-197)||(8433576-8433625)
chr5 (133-196)||(35192177-35192240)
chr5 (148-194)||(41842825-41842871)
chr5 (150-180)||(15523691-15523721)
chr5 (150-180)||(39544277-39544307)
[»] chr2 (6 HSPs)
chr2 (216-317)||(52828-52929)
chr2 (132-178)||(5558751-5558797)
chr2 (148-193)||(52955-53000)
chr2 (148-197)||(7763664-7763713)
chr2 (148-191)||(35321186-35321229)
chr2 (148-188)||(34620195-34620235)
[»] chr1 (4 HSPs)
chr1 (148-197)||(12037605-12037653)
chr1 (147-197)||(24184492-24184542)
chr1 (216-317)||(12037669-12037770)
chr1 (148-197)||(52128451-52128500)
[»] scaffold0369 (1 HSPs)
scaffold0369 (133-197)||(14373-14438)
[»] scaffold0027 (1 HSPs)
scaffold0027 (133-180)||(4149-4197)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 29617802 - 29617914
Alignment:
Q  20 cacaactcgtaaataactatttccatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccttttct 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29617802 cacaactcgtaaataactattttcatacaaactcattttgaacctctatgcaactcaactagatcctaaaacgccattgtcatgcattgattccatttct 29617901  T
Q  120 tctttcataatag 132  Q
    |||||||||||||    
T  29617902 tctttcataatag 29617914  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 223552 - 223607
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaattt 187  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  223552 cagggccggcaatgagggggtgcaaacagctctactgagctgggcgtccaaaattt 223607  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 26253085 - 26253120
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaa 183  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26253085 ggggtgcaaacagctcttctgagctgggcctccaaa 26253120  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 9939491 - 9939426
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  9939491 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 9939426  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 10027618 - 10027683
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  10027618 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 10027683  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 29241595 - 29241530
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29241595 cagggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29241530  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 36698808 - 36698744
Alignment:
Q  134 agggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  36698808 agggccggccttggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 36698744  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 24608371 - 24608306
Alignment:
Q  133 cagggccggccatgagggg--tgcaaacagctctactgagctgggcctccaaaatttgagggccca 196  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  24608371 cagggccggccatgaggggggtgcaaacagctctactgagctgggcctccaaaattttggggccca 24608306  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 30124240 - 30124176
Alignment:
Q  133 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||||||| |||| ||||||||    
T  30124240 cagggccggcctttaggggtgcaaacagctctaatgagttgggcctccaaattttgggggcccaa 30124176  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 11574463 - 11574512
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||||||||||||||||||| ||| |||| | ||||||    
T  11574463 ggggtgcaaacagctctactgagctgggcctcaaaattttgggtgcccaa 11574512  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 30832735 - 30832685
Alignment:
Q  130 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 180  Q
    |||||||| || || ||||||||||||||||||| | ||||||||||||||    
T  30832735 tagcaggggcgtccttgaggggtgcaaacagctcaaatgagctgggcctcc 30832685  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 3850593 - 3850651
Alignment:
Q  131 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttg 188  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3850593 agcagggccggccatgagggggtgcaaacagctatactgagctgggcctccaaaatttg 3850651  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 16924715 - 16924662
Alignment:
Q  130 tagcagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaa 183  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16924715 tagcagggccggccttgaggggtacaaacagctctactgagctgggccttcaaa 16924662  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 31984881 - 31984820
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggc 193  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  31984881 cagggccggccttgagggggtgcaaacagctctactgagccgggcctccaaaatttgggggc 31984820  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 979385 - 979434
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  979385 ggggtgcaaacagctctactgagctgggcctcctaaatttggaggcccaa 979434  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 40089330 - 40089372
Alignment:
Q  138 ccggccatgaggggtgcaaacagctctactgagctgggcctcc 180  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  40089330 ccggccatgaggggtgcaaacagctcaacagagctgggcctcc 40089372  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 38352554 - 38352507
Alignment:
Q  133 cagggccggccatgaggggtgcaaacagctctactgagctgggcctcc 180  Q
    |||| |||||| ||||||||||||||||||| || |||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcc 38352507  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 3850680 - 3850710
Alignment:
Q  216 atatatgctgcatggaaataaataatatata 246  Q
    |||||||||||||||||||||||||||||||    
T  3850680 atatatgctgcatggaaataaataatatata 3850710  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 25887351 - 25887285
Alignment:
Q  132 gcagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  25887351 gcagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 25887285  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 29690999 - 29690934
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  29690999 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 29690934  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 45996940 - 45996891
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  45996940 ggggtgcaaacagctctaccgagctgggtctcccaaatttggaggcccaa 45996891  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 7443710 - 7443750
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttg 188  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  7443710 ggggtgcaaacagctctaccgaaccgggcctccaaaatttg 7443750  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 11467757 - 11467822
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||    
T  11467757 cagggctggccatgagggggtgcaaacagctctactgagctgggccttcaaaattttagggcccaa 11467822  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 25373690 - 25373625
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  25373690 cagggccgaccatgagggggtgcaaacagctctactgagctgggcctccaaaattttggggcccaa 25373625  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 40740227 - 40740266
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaattt 187  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  40740227 ggggtgcaaacagctctactgagttgggcctcctaaattt 40740266  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 45294647 - 45294580
Alignment:
Q  131 agcagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| ||||||||    
T  45294647 agcagggccgtccttgagggggtgcaaacagctctaatgagctgggcctccaaaatttgggggcccaa 45294580  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 4322548 - 4322486
Alignment:
Q  136 ggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| ||||||  ||||||||    
T  4322548 ggccggccatgagggggtgcaaacagctctattgagctgggcctcctaaattttggggcccaa 4322486  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 1176275 - 1176226
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  1176275 ggggtgcaaacagctctactgagctagacctccaaaatttgggggcccaa 1176226  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 33978720 - 33978655
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||  |||||||    
T  33978720 cagggccggccttgagggggtgcaaacagctctactgagctgagcctccaaattttggaggcccaa 33978655  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 7587911 - 7587960
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||||||| |||||  |||||||||| || ||||||||    
T  7587911 ggggtgcaaacagctctactaagctgaacctccaaaatatgggggcccaa 7587960  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 9491991 - 9491942
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||||||||||||||||| ||| |||| |||  ||||||||    
T  9491991 ggggtgcaaacagctctactgagctggaccttcaaattttaggggcccaa 9491942  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 15270191 - 15270126
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  15270191 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 15270126  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 33963563 - 33963498
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||  |||||||| ||||  |||||||    
T  33963563 cagggccggccttgagggggtgcaaacagctctactgcgctgaacctccaaattttggaggcccaa 33963498  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 31068174 - 31068109
Alignment:
Q  133 cagggccggccatgagggg-tgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||  ||||||||    
T  31068174 cagggccggccataagggggtgcagacagctctactgagctgggcctccaaaattttggggcccaa 31068109  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 8433625 - 8433576
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||||||    
T  8433625 ggggtgcaaacagctctaatgagctgggcctccaaattttgggggcccaa 8433576  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 35192177 - 35192240
Alignment:
Q  133 cagggccggccatgaggggtgcaaacagctctactgagctgggcctccaaaatttgagggccca 196  Q
    ||||||||| | || ||||||||||||||||||||||||||| |||||||| |||  |||||||    
T  35192177 cagggccggtcttgtggggtgcaaacagctctactgagctggacctccaaattttaggggccca 35192240  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 41842825 - 41842871
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcc 194  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  41842825 ggggtacaaacagctctactgagctgggccttcaaaatttgggggcc 41842871  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 15523691 - 15523721
Alignment:
Q  150 ggtgcaaacagctctactgagctgggcctcc 180  Q
    |||||||||||||||||||||||||||||||    
T  15523691 ggtgcaaacagctctactgagctgggcctcc 15523721  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 39544277 - 39544307
Alignment:
Q  150 ggtgcaaacagctctactgagctgggcctcc 180  Q
    |||||||||||||||||||||||||||||||    
T  39544277 ggtgcaaacagctctactgagctgggcctcc 39544307  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 317
Target Start/End: Complemental strand, 52929 - 52828
Alignment:
Q  216 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 315  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||  || |||  |||  ||||||||  ||| ||||||||||||||| | ||||||||    
T  52929 atatatgctgcatggaaataaataatatatacatgtggcgtggaaaattttcaagtatgtctaaatggttgagtggtaagaatgggaatctgcattgcat 52830  T
Q  316 ag 317  Q
    ||    
T  52829 ag 52828  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 5558797 - 5558751
Alignment:
Q  132 gcagggccggccatgaggggtgcaaacagctctactgagctgggcct 178  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5558797 gcagggccgggcatgaggggtgcaaacagctctattgagctgggcct 5558751  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 53000 - 52955
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggc 193  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53000 ggggtgcaagcagctctactgagctgggcctccaaaatttgggggc 52955  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 7763664 - 7763713
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||||||||||||||| ||||| ||||||||||| | ||||||    
T  7763664 ggggtgcaaacagctctactgagttgggcttccaaaatttgggagcccaa 7763713  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 35321229 - 35321186
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagg 191  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  35321229 ggggtgcaaacagctctactgaactgggcctccaatttttgagg 35321186  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 34620235 - 34620195
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttg 188  Q
    |||||||||||| |||||||||||| |||||||||| ||||    
T  34620235 ggggtgcaaacaactctactgagctaggcctccaaattttg 34620195  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 12037605 - 12037653
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12037605 ggggtgcaaacagctctactgagctgggcctccaaaattt-agggcccaa 12037653  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 24184542 - 24184492
Alignment:
Q  147 aggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||||||||    
T  24184542 aggggtgcaaacagctatattgagctgggcctccaaattttgggggcccaa 24184492  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 12037669 - 12037770
Alignment:
Q  216 atatatgctgcatggaaataaataatatatacatgcagcgcggaaggttatcatttattcctaaatggaagagcggtaagaatgggaatttacattgcat 315  Q
    |||||||||||| ||||||||||| ||||||| ||  ||||| || ||| |||  |||  |||| |||  |||||||||||||||||| ||  |||||||    
T  12037669 atatatgctgcacggaaataaatagtatatacttgtggcgcgaaaagttttcaagtatgtctaactggccgagcggtaagaatgggaaattgtattgcat 12037768  T
Q  316 ag 317  Q
    ||    
T  12037769 ag 12037770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 52128500 - 52128451
Alignment:
Q  148 ggggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    |||||||||||||||||| || ||||||||||| |||||||  |||||||    
T  52128500 ggggtgcaaacagctctattgggctgggcctcctaaatttggaggcccaa 52128451  T

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Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 14373 - 14438
Alignment:
Q  133 cagggccggccatgagg-ggtgcaaacagctctactgagctgggcctccaaaatttgagggcccaa 197  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||  |||||  ||||||||    
T  14373 cagggccggccctggggaggtgcaaacagctctacagagctgggcctccccaattttggggcccaa 14438  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 4149 - 4197
Alignment:
Q  133 cagggccggccatgag-gggtgcaaacagctctactgagctgggcctcc 180  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  4149 cagggccggccctgagagggtgcaaacagctcaacagagctgggcctcc 4197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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