View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_17 (Length: 316)
Name: NF12511_low_17
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 34523947 - 34524234
Alignment:
| Q |
12 |
ttttataaatagagacactttctagcagatattgtgatgttgttacagagttgtggcaagagtttatcttattatcctacaatgcctccaccagatgcat |
111 |
Q |
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| T |
34523947 |
ttttataaatagagacactttctagcagatattgtgatgttgttaccgagttgtggcaagagtttatcttattatcctacaatgcctccaccagatgcat |
34524046 |
T |
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| Q |
112 |
cttaaatcttaatgtactaaacattgacatctgataaattgaattttgacatgatcaacgattgtatgtaggatttacttccacgttaagataaaacata |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34524047 |
cttaaatcttaatgtactaaacattgatatctgataaattgaattttgacatgatcaacgattgtatgtaggatttacttccacgttaagataaaacata |
34524146 |
T |
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| Q |
212 |
tttgtgatatgacattccatattcagccaacttagatggtgatgcagtcgatgatgtacaaactcacgaatttttcaacacaattact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34524147 |
tttgtgatatgacattccatattcagccaacttagatggtgatgcagtcgatgatgtacaaactcacgaattttgcaacacaactact |
34524234 |
T |
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