View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12511_low_2 (Length: 569)

Name: NF12511_low_2
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12511_low_2
NF12511_low_2
[»] chr2 (7 HSPs)
chr2 (73-300)||(27948520-27948750)
chr2 (462-539)||(27892212-27892291)
chr2 (251-311)||(3604260-3604320)
chr2 (328-390)||(27948839-27948906)
chr2 (462-539)||(27891269-27891348)
chr2 (483-539)||(16602888-16602944)
chr2 (462-539)||(16604085-16604164)
[»] chr4 (18 HSPs)
chr4 (239-333)||(23756974-23757068)
chr4 (239-326)||(5432463-5432550)
chr4 (328-386)||(56234782-56234840)
chr4 (465-539)||(18091743-18091819)
chr4 (467-539)||(38031331-38031402)
chr4 (467-539)||(38032301-38032375)
chr4 (462-539)||(22622030-22622106)
chr4 (462-539)||(34095535-34095614)
chr4 (467-553)||(35927000-35927085)
chr4 (462-539)||(22623022-22623098)
chr4 (462-539)||(17356524-17356603)
chr4 (469-538)||(35925855-35925926)
chr4 (466-553)||(36074674-36074763)
chr4 (483-552)||(7261442-7261511)
chr4 (467-539)||(5433291-5433362)
chr4 (483-539)||(8815256-8815312)
chr4 (483-539)||(23757869-23757925)
chr4 (483-539)||(48501223-48501279)
[»] chr7 (22 HSPs)
chr7 (328-389)||(13750373-13750434)
chr7 (469-553)||(43114970-43115056)
chr7 (462-553)||(18788436-18788529)
chr7 (464-553)||(43961082-43961170)
chr7 (251-311)||(40739293-40739353)
chr7 (462-553)||(45399886-45399979)
chr7 (330-379)||(40739077-40739126)
chr7 (463-536)||(18787314-18787389)
chr7 (462-539)||(29186827-29186906)
chr7 (469-553)||(44748449-44748532)
chr7 (469-553)||(9391668-9391754)
chr7 (462-539)||(43113837-43113916)
chr7 (467-539)||(7011797-7011871)
chr7 (467-539)||(7027155-7027229)
chr7 (473-553)||(43962456-43962538)
chr7 (492-538)||(42611580-42611626)
chr7 (469-539)||(13597306-13597378)
chr7 (466-539)||(19217790-19217862)
chr7 (498-539)||(32518575-32518616)
chr7 (483-539)||(29187929-29187985)
chr7 (462-535)||(37235951-37236026)
chr7 (483-539)||(44417620-44417676)
[»] chr8 (14 HSPs)
chr8 (330-381)||(26365839-26365890)
chr8 (462-539)||(521976-522052)
chr8 (462-539)||(9244228-9244307)
chr8 (462-539)||(20309086-20309165)
chr8 (462-539)||(21095719-21095798)
chr8 (462-539)||(30640960-30641039)
chr8 (465-539)||(26364904-26364977)
chr8 (483-539)||(9245330-9245386)
chr8 (462-539)||(26366070-26366149)
chr8 (462-553)||(43584557-43584647)
chr8 (483-541)||(41636992-41637050)
chr8 (489-539)||(43133973-43134023)
chr8 (462-539)||(30644584-30644660)
chr8 (462-539)||(34643841-34643920)
[»] chr5 (8 HSPs)
chr5 (462-553)||(12372463-12372556)
chr5 (462-542)||(6803501-6803583)
chr5 (467-539)||(19229954-19230028)
chr5 (462-539)||(13278104-13278186)
chr5 (461-537)||(39164219-39164296)
chr5 (467-539)||(19229001-19229072)
chr5 (468-553)||(12373602-12373686)
chr5 (462-541)||(4031982-4032065)
[»] chr1 (16 HSPs)
chr1 (462-553)||(21203160-21203253)
chr1 (461-539)||(51468502-51468582)
chr1 (465-539)||(52759526-52759602)
chr1 (251-311)||(6241977-6242037)
chr1 (462-539)||(7111351-7111430)
chr1 (342-381)||(45228698-45228737)
chr1 (467-539)||(7110389-7110460)
chr1 (462-539)||(17244338-17244417)
chr1 (464-553)||(38235028-38235119)
chr1 (462-538)||(45228439-45228517)
chr1 (330-379)||(6242204-6242253)
chr1 (462-539)||(52761475-52761551)
chr1 (461-538)||(51468776-51468855)
chr1 (492-538)||(47533762-47533808)
chr1 (462-539)||(45229482-45229558)
chr1 (466-539)||(51693310-51693382)
[»] chr6 (12 HSPs)
chr6 (465-553)||(34996643-34996730)
chr6 (462-539)||(32348916-32348992)
chr6 (251-309)||(29466500-29466558)
chr6 (462-539)||(11801218-11801297)
chr6 (483-539)||(32347971-32348027)
chr6 (462-539)||(34995514-34995593)
chr6 (462-539)||(32712518-32712594)
chr6 (462-553)||(3000675-3000762)
chr6 (489-539)||(21095284-21095334)
chr6 (497-539)||(27719898-27719940)
chr6 (483-532)||(21094575-21094624)
chr6 (330-379)||(29466282-29466331)
[»] chr3 (17 HSPs)
chr3 (462-555)||(52522073-52522168)
chr3 (462-553)||(35759107-35759200)
chr3 (467-539)||(28777571-28777642)
chr3 (462-539)||(28776611-28776690)
chr3 (462-539)||(37610639-37610718)
chr3 (466-539)||(50879850-50879925)
chr3 (492-539)||(5689882-5689929)
chr3 (462-539)||(31937198-31937280)
chr3 (462-553)||(35758153-35758245)
chr3 (462-539)||(55209944-55210026)
chr3 (462-539)||(47431066-47431142)
chr3 (483-539)||(17740993-17741049)
chr3 (483-539)||(19042313-19042369)
chr3 (462-539)||(46903503-46903579)
chr3 (492-552)||(21729096-21729156)
chr3 (462-539)||(43392769-43392848)
chr3 (483-539)||(43393952-43394008)
[»] scaffold0026 (1 HSPs)
scaffold0026 (462-539)||(104414-104493)
[»] scaffold0878 (2 HSPs)
scaffold0878 (462-539)||(2900-2981)
scaffold0878 (462-539)||(1931-2010)
[»] scaffold0349 (1 HSPs)
scaffold0349 (497-539)||(9320-9362)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 73 - 300
Target Start/End: Original strand, 27948520 - 27948750
Alignment:
Q  73 atctaaagttgtgattttgccgaacataattttctgttccgatggagaatatgttcctcttaagatttttctatcatgctg---tagttggagatggaga 169  Q
    |||||||| ||  |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| || ||||| ||   ||| |||| |||||||    
T  27948520 atctaaagctgcaattttgccgagcataattttctgttccgatgaagaatttgttcctcttaagattttcctctcatgatgatgtagatggaaatggaga 27948619  T
Q  170 tgaagattattttgcgatggtgtatatgtgtgttacctctataaaggaagcaactcattaacccataaaattttgacattggaatctggaattgatgaac 269  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||     
T  27948620 taaagattattttgcgatggtgtatgtgtgtgttacctctataaaggcagcaactcattaatccataaaattttgacattcgaatttggaattgatgaat 27948719  T
Q  270 gaaagaggaagaagagtttggataacagaat 300  Q
    | ||||||||||||||||||||||| |||||    
T  27948720 ggaagaggaagaagagtttggataatagaat 27948750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 27892212 - 27892291
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  27892212 aatgtagatgaagatgagggaagaagaaaaaaaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 27892291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 3604260 - 3604320
Alignment:
Q  251 gaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgatat 311  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||    
T  3604260 gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgatat 3604320  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 27948839 - 27948906
Alignment:
Q  328 ggtttttgagagtagaagacatgaagattggggtttt-aaaagc----ataatttgatgaagatgatg 390  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||    ||||||||||||||||||||    
T  27948839 ggtttttgagagaagaagacataaagattggggttttaaaaagcatatataatttgatgaagatgatg 27948906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 27891348 - 27891269
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||| |||||||  |||| || |||| |||||||||| || ||| |||||||||  ||||||||||||||    
T  27891348 aatgtagatgaagacgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactggaaaatctgatagac 27891269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 16602944 - 16602888
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| ||||||||| |||||||||||||||    
T  16602944 aagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatctgatagac 16602888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 16604085 - 16604164
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||||||||  |||| || |||| ||||||||  ||| ||| || |||||||||||||||| |||||    
T  16604085 aatgaagatgaagatgagggaagaagaagaagaaagtaaataaatccagtgttggtggtacactataaaatctggtagac 16604164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 23757068 - 23756974
Alignment:
Q  239 attttgacattggaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgatatcatgttgctggactatggtttt 333  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  23757068 attttgacattcgaatctggaattgatgaatggaagaggaagaagagtttggataatagaattgaaatgatatcatgttgctggactacggtttt 23756974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 5432550 - 5432463
Alignment:
Q  239 attttgacattggaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgatatcatgttgctggacta 326  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||    
T  5432550 attttgacattcgaatctggaattgatgaatggaagaggaagaagagtttggataatagaatttgaatgataccatgttgttggacta 5432463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 56234782 - 56234840
Alignment:
Q  328 ggtttttgagagtagaagacatgaagattggggttttaaaagcataatttgatgaagat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56234782 ggtttttgagagtagaagacatgaagattggggttttaaaagcataatttgatgaagat 56234840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 539
Target Start/End: Complemental strand, 18091819 - 18091743
Alignment:
Q  465 gtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  18091819 gtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 18091743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 38031402 - 38031331
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| |||| ||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  38031402 agatgaagatgatggaa-gaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 38031331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 38032301 - 38032375
Alignment:
Q  467 agatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| ||||  |||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  38032301 agatgaagatgatggaagaagaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 38032375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 22622106 - 22622030
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||||| ||| || |||| |||||||||  || | | |||||||||||||||||||||||||    
T  22622106 aatgtagatgaagatgagggaa-gaagaagaaagtaaataaattcggtgtcggtgatacactataaaatctgatagac 22622030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 34095535 - 34095614
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||| ||||  |||| || |||| |||||||||| || | | |||||||||||||||||||||||||    
T  34095535 aatgtagatgaagatgatggaagaagaagaagaaagtaaataaattaggtgtgggtgatacactataaaatctgatagac 34095614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 553
Target Start/End: Original strand, 35927000 - 35927085
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||| ||| ||| || |||| |||||||||| || ||| ||||||||||||||||||| ||||| ||  |||||||||    
T  35927000 agatgaagatgagagaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatctggtagaccttcgtaatccaac 35927085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 22623022 - 22623098
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||||| ||| || | || ||||||||||  | ||| ||||||| |||||||||||||||||    
T  22623022 aatgtagatgaagatgagggaa-gaagaagagagtaaataaattagatgttggtgatacattataaaatctgatagac 22623098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 17356603 - 17356524
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||||||||  |||| || |||| |||| || || || ||| |||||||||||||||||||||||||    
T  17356603 aatgaagatgaagatgagggaagaagaagaagaaagtaaatgaactaggtgttggtgatacactataaaatctgatagac 17356524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 538
Target Start/End: Complemental strand, 35925926 - 35925855
Alignment:
Q  469 atgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgataga 538  Q
    ||||||||||||| |  |||| || |||| |||||||||| || |||| |||||||||||||||||||||||    
T  35925926 atgaagatgaggggagaagaagaagaaagtaaataaattaggtgttgacgatacactataaaatctgataga 35925855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 553
Target Start/End: Original strand, 36074674 - 36074763
Alignment:
Q  466 tagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||||  |||| |  |||  |||||||||| || ||| |||||||||||||||| |||||||| ||  |||||||||    
T  36074674 tagatgaagatgagggaagaagaagaggaaattaaataaattaggtgttggtgatacactataaaatatgatagaccttcgtaatccaac 36074763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 552
Target Start/End: Original strand, 7261442 - 7261511
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaa 552  Q
    ||||| || |||| |||||||||| || ||| |||||||||||||||||| |||||| ||  ||||||||    
T  7261442 aagaagaagaaagtaaataaattaggtgttggtgatacactataaaatcttatagaccttcgtaatccaa 7261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 5433291 - 5433362
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||| ||| || |||  |||||||||| || ||  ||||||| |||||||||||||||||    
T  5433291 agatgaagatgagggaa-gaagaagaaattaaataaattaggtgtttgtgatacattataaaatctgatagac 5433362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 8815256 - 8815312
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||  || ||| |||||||||||||||||||||||||    
T  8815256 aagaagaagaaagtaaataaatttggtgttggtgatacactataaaatctgatagac 8815312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 23757869 - 23757925
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| |||||||| ||||||||||||||||    
T  23757869 aagaagaagaaagtaaataaattaggtgttggtgatacaccataaaatctgatagac 23757925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 48501223 - 48501279
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || |||||||||||| ||||||||||| ||||    
T  48501223 aagaagaagaaagtaaataaattaggtgttgatgatacacaataaaatctgacagac 48501279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 13750373 - 13750434
Alignment:
Q  328 ggtttttgagagtagaagacatgaagattggggttttaaaagcataatttgatgaagatgat 389  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13750373 ggtttttgagagaagaagacatgaatattggggttttaaaagcataatttgatgaagatgat 13750434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 469 - 553
Target Start/End: Original strand, 43114970 - 43115056
Alignment:
Q  469 atgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||||  |||| || |||| |||||||||| ||| ||||||| |||||||||||||||||||||| | |||||||||    
T  43114970 atgaagatgagggaagaagaagaagaaagtaaataaattaggttatgatgatgcactataaaatctgatagacttcagtaatccaac 43115056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 553
Target Start/End: Original strand, 18788436 - 18788529
Alignment:
Q  462 aatgtagatgaagatgagggaaaga--ataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||||||||||||||  | || |||| |||||||||| || ||| ||||||| ||||||||||||||||| ||  |||||||||    
T  18788436 aatgtagatgaagatgagggaaagagaagaagaaagtaaataaattaggtgttggtgatacattataaaatctgatagaccttcgtaatccaac 18788529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 464 - 553
Target Start/End: Complemental strand, 43961170 - 43961082
Alignment:
Q  464 tgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||||||||| ||| || |||| |||||||||| || ||  ||||||||||||||||||||||||| ||  |||||||||    
T  43961170 tgtagatgaagatgagggaa-gaagaagaaagtaaataaattaggtgttagtgatacactataaaatctgatagacctttgtaatccaac 43961082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 40739353 - 40739293
Alignment:
Q  251 gaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgatat 311  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||    
T  40739353 gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgatat 40739293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 553
Target Start/End: Original strand, 45399886 - 45399979
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||| ||||  |||| || |||| |||||||||| || ||  ||||||||||||||||||||||||| ||  |||||||||    
T  45399886 aatgtagatgaagatgaaggaagaagaagaagaaagtaaataaattaggtgttagtgatacactataaaatctgatagaccttcgtaatccaac 45399979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 40739126 - 40739077
Alignment:
Q  330 tttttgagagtagaagacatgaagattggggttttaaaagcataatttga 379  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  40739126 tttttgagagaagaagacatgaagattgggtttttaaaaacataatttga 40739077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 18787389 - 18787314
Alignment:
Q  463 atgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgata 536  Q
    ||||||||||| |||||||||  |||| || |||| ||||||||||||| ||| |||||||| |||||||||||||    
T  18787389 atgtagatgaatatgagggaagaagaagaagaaagtaaataaattaagtgttggtgatacaccataaaatctgata 18787314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 29186906 - 29186827
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  | || || |||  |||||||||| || ||| |||||||||||||||||||||||||    
T  29186906 aatgtagatgaagatgagggaagaaaaagaagaaaataaataaattaggtgttggtgatacactataaaatctgatagac 29186827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 553
Target Start/End: Original strand, 44748449 - 44748532
Alignment:
Q  469 atgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||| |||| ||| || |||| |||||||||| || ||| ||||||||||||||||||||||||| ||  |||||||||    
T  44748449 atgaagatgatggaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagaccttcgtaatccaac 44748532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 553
Target Start/End: Complemental strand, 9391754 - 9391668
Alignment:
Q  469 atgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||| ||||  |||| || |||| |||||||||  || ||||||||||||||||||||||||||||| ||  |||||||||    
T  9391754 atgaagatgatggaagaagaagaagaaagtaaataaatttggtgttgatgatacactataaaatctgatagaccttcgtaatccaac 9391668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 43113916 - 43113837
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  |||| || |||| |||||||||| ||  || |||||||||||||||||||||||||    
T  43113916 aatgaagatgaagatgatggaagaagaagaagaaagcaaataaattaggtgctggtgatacactataaaatctgatagac 43113837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 7011871 - 7011797
Alignment:
Q  467 agatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||| |||  |||  ||||||| |||||||||| || ||| |||||||||||||||||| ||||||    
T  7011871 agatgaagatgagagaagaagatgaataaagtaaataaattaggtgttggtgatacactataaaatcttatagac 7011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 7027229 - 7027155
Alignment:
Q  467 agatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||| |||  |||  ||||||| |||||||||| || ||| |||||||||||||||||| ||||||    
T  7027229 agatgaagatgagagaagaagatgaataaagtaaataaattaggtgttggtgatacactataaaatcttatagac 7027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 553
Target Start/End: Original strand, 43962456 - 43962538
Alignment:
Q  473 agatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||  |||| || ||||||||||||||| || ||  ||||| ||||||||||||||||||| ||  |||||||||    
T  43962456 agatgagggaagaagaagaagaaaggaaataaattaggtgttagtgatatactataaaatctgatagaccttcgtaatccaac 43962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 538
Target Start/End: Complemental strand, 42611626 - 42611580
Alignment:
Q  492 aaaggaaataaattaagttttgatgatacactataaaatctgataga 538  Q
    |||| |||||||| |||| ||||||||||||||||| ||||||||||    
T  42611626 aaagtaaataaatcaagtattgatgatacactataagatctgataga 42611580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 539
Target Start/End: Complemental strand, 13597378 - 13597306
Alignment:
Q  469 atgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||| ||||  |||| || |||| |||||||||| || ||| |||||||||||||||||| ||||||    
T  13597378 atgaagatgatggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatcttatagac 13597306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 19217862 - 19217790
Alignment:
Q  466 tagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||| |||| ||| || |||| |||||||||| || ||| ||||||||||||||||| |||||||    
T  19217862 tagacgaagatgatggaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatccgatagac 19217790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 539
Target Start/End: Complemental strand, 32518616 - 32518575
Alignment:
Q  498 aataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||| || ||| |||||||||||||||||||||||||    
T  32518616 aataaattaggtgttggtgatacactataaaatctgatagac 32518575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 29187929 - 29187985
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| |||| ||||||||||||||||||||    
T  29187929 aagaagaagaaagtaaataaattaggtgttggtgatgcactataaaatctgatagac 29187985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 37236026 - 37235951
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgat 535  Q
    |||||||||||||||| |||||  |||| | ||||| |||||||||| || ||| ||||||| | |||||||||||    
T  37236026 aatgtagatgaagatgtgggaagaagaagagtaaagtaaataaattaggtgttggtgatacattgtaaaatctgat 37235951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 44417676 - 44417620
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| ||||| |||||||||||||||||||    
T  44417676 aagaagaagaaagtaaataaattaggtgttggtgatagactataaaatctgatagac 44417620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 26365839 - 26365890
Alignment:
Q  330 tttttgagagtagaagacatgaagattggggttttaaaagcataatttgatg 381  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26365839 tttttgagagaagaagacatgaagattggggttttaaaagcataatttgatg 26365890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 521976 - 522052
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||||| ||| || |||| |||||||||| |  ||| |||||||||||||||| ||||||||    
T  521976 aatgtagatgaagatgagggaa-gaagaagaaagtaaataaattaggggttggtgatacactataaaatttgatagac 522052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 9244307 - 9244228
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  | || || |||  |||||||||| || ||| |||||||||||||||||||||||||    
T  9244307 aatgtagatgaagatgagggaagaaaaagaagaaaataaataaattaggtgttggtgatacactataaaatctgatagac 9244228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 20309165 - 20309086
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  20309165 aatggagatgaagatgatggaagaagaagaagaaagtaaataaattaggtattggtgatacactataaaatctgatagac 20309086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 21095798 - 21095719
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  21095798 aatggagatgaagatgatggaagaagaagaagaaagtaaataaattaggtattggtgatacactataaaatctgatagac 21095719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 30641039 - 30640960
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||| ||||||  |||| || |||| |||||||||| || ||| |||||||||||||||| ||||||||    
T  30641039 aatgtagatgaagataagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatttgatagac 30640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 539
Target Start/End: Complemental strand, 26364977 - 26364904
Alignment:
Q  465 gtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||| ||| || |||  |||||||||| || ||| ||||||| |||||||||||||||||    
T  26364977 gtagatgaagatgagggaa-gaagaagaaactaaataaattaggtgttggtgatacattataaaatctgatagac 26364904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 9245330 - 9245386
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  9245330 aagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 9245386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 26366070 - 26366149
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||| |||||| ||||||  |||| || |||| |||||||||| || ||| |||||||||||||||||| ||||||    
T  26366070 aatgtagaagaagattagggaagaagaagaagaaagtaaataaattatgtgttggtgatacactataaaatctaatagac 26366149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 43584647 - 43584557
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||| |||||||||||| |||| ||| || |||| ||||||||||    ||| ||||||| ||||||||||||||||||||  |||||||||    
T  43584647 aatgaagatgaagatgatggaa-gaagaagaaagtaaataaattagacattggtgatacattataaaatctgatagacttttgtaatccaac 43584557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 541
Target Start/End: Complemental strand, 41637050 - 41636992
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactt 541  Q
    ||||| || |||| |||||||||| || ||| |||||||| ||||||||||||||||||    
T  41637050 aagaagaagaaagtaaataaattaggtgttggtgatacacgataaaatctgatagactt 41636992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 539
Target Start/End: Original strand, 43133973 - 43134023
Alignment:
Q  489 aataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||| |||||||| |||| ||| ||||||||||||||||||| |||||    
T  43133973 aataaagtaaataaatcaagtgttggtgatacactataaaatctggtagac 43134023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 30644584 - 30644660
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||| ||||| || |||  |||||||||| || ||| |||| || |||||||| ||||||||    
T  30644584 aatgtagatgaagatgaggg-aagaagaaaaaactaaataaattaggtgttggtgatccattataaaatttgatagac 30644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 34643841 - 34643920
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  |||| || ||   |||||||||| || ||| |||||| | ||||||||||||||||    
T  34643841 aatgtagatgaagatgagggaagaagaagaagaatccaaataaattaggtgttggtgatacgccataaaatctgatagac 34643920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 12372556 - 12372463
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||||||||  |||| || |||| |||||||||| || ||| ||||||||||||||||||||||||| ||  |||||||||    
T  12372556 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagaccttcgtaatccaac 12372463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 462 - 542
Target Start/End: Original strand, 6803501 - 6803583
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagacttt 542  Q
    ||||||||||||||||||||||  |||| || |||| ||||||||||  | ||| ||||||||||||||||||||||||||||    
T  6803501 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattagatgttggtgatacactataaaatctgatagacttt 6803583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 19229954 - 19230028
Alignment:
Q  467 agatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| ||||  |||| || |||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  19229954 agatgaagatgatggaagaagaagaagaaagtaaataaattaagtgttgatgatacactataaaatttgatagac 19230028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 13278104 - 13278186
Alignment:
Q  462 aatgtagatgaagatgagggaa-----agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||||||||     |||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||    
T  13278104 aatggagatgaagatgagggaagaagaagaagaataaagtaaataaattaggtgttggtgatacactataaaatctgatagac 13278186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 537
Target Start/End: Complemental strand, 39164296 - 39164219
Alignment:
Q  461 aaatgtagatgaagatgagggaaa-gaataataaaggaaataaattaagttttgatgatacactataaaatctgatag 537  Q
    |||||||||||||||||||| ||| ||| || |||| |||||||||| || ||| |||||||||||||||| ||||||    
T  39164296 aaatgtagatgaagatgaggaaaaagaagaaaaaagtaaataaattaggtgttggtgatacactataaaatttgatag 39164219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 19229072 - 19229001
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| |||| ||| || |||| |||||||||| || |||||||||||||||||||||| ||||||    
T  19229072 agatgaagatgatggaa-gaagaagaaagtaaataaattaggtgttgatgatacactataaaatctaatagac 19229001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 553
Target Start/End: Original strand, 12373602 - 12373686
Alignment:
Q  468 gatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||||| ||| || |||| |||||||||| || ||| ||||||| | ||||||||||||||| ||  |||||||||    
T  12373602 gatgaagatgagggaa-gaagaagaaagtaaataaattaggtgttggtgatacagtgtaaaatctgatagacattcgtaatccaac 12373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 541
Target Start/End: Complemental strand, 4032065 - 4031982
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaata--aattaagttttgatgatacactataaaatctgatagactt 541  Q
    ||||||||||||||||| ||||  |||| || |||| |||||  ||||| || ||| ||||||||||||||||||| |||||||    
T  4032065 aatgtagatgaagatgaaggaagaagaagaagaaagtaaatataaattaggtgttggtgatacactataaaatctggtagactt 4031982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 21203253 - 21203160
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||||  ||  ||||||| |||| |||||||||| || ||||||||||||||||||||||||||||| ||  |||||||||    
T  21203253 aatgtagatgaagatgagaaaagaagaataagaaagtaaataaattaggtgttgatgatacactataaaatctgatagacctttgtaatccaac 21203160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 461 - 539
Target Start/End: Complemental strand, 51468582 - 51468502
Alignment:
Q  461 aaatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||||||  |||| || |||| |||||||||  || ||| |||||||||||||||||||||||||    
T  51468582 aaatgtagatgaagatgagggaagaagaagaaaaaagtaaataaattgggtgttggtgatacactataaaatctgatagac 51468502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 539
Target Start/End: Complemental strand, 52759602 - 52759526
Alignment:
Q  465 gtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  52759602 gtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 52759526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 6241977 - 6242037
Alignment:
Q  251 gaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgatat 311  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||    
T  6241977 gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgatat 6242037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 7111351 - 7111430
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  |||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  7111351 aatggagatgaagatgatggaagaagaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 7111430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 45228737 - 45228698
Alignment:
Q  342 gaagacatgaagattggggttttaaaagcataatttgatg 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45228737 gaagacatgaagattggggttttaaaagcataatttgatg 45228698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 7110460 - 7110389
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| |||| ||| || |||| |||||||||| |  |||||||||||||||||||||||||||||    
T  7110460 agatgaagatgatggaa-gaagaagaaagtaaataaattaggcgttgatgatacactataaaatctgatagac 7110389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 17244417 - 17244338
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  |||| || |||| |||||||||| || | | ||||||| |||||||||||||||||    
T  17244417 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtatcggtgatacattataaaatctgatagac 17244338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 553
Target Start/End: Original strand, 38235028 - 38235119
Alignment:
Q  464 tgtagatgaagatgaggga--aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||||||||  ||||| || |||| |||||||||| || ||| ||||||||| |||||||| |||||| ||  |||||||||    
T  38235028 tgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatcttatagacattcgtaatccaac 38235119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 538
Target Start/End: Complemental strand, 45228517 - 45228439
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgataga 538  Q
    ||||||||||||||||||||||  |||| || |||| ||||||||||||  ||  |||||||||||||||| |||||||    
T  45228517 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaagcgtttgtgatacactataaaatttgataga 45228439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 6242204 - 6242253
Alignment:
Q  330 tttttgagagtagaagacatgaagattggggttttaaaagcataatttga 379  Q
    |||||||||| ||||||||||||||||| | |||||||| ||||||||||    
T  6242204 tttttgagagaagaagacatgaagattgagtttttaaaaacataatttga 6242253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 52761475 - 52761551
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| |||| |||  | |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  52761475 aatgaagatgaagatgatggaa-gaaggagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 52761551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 51468776 - 51468855
Alignment:
Q  461 aaatgtagatgaagatgaggga--aagaataataaaggaaataaattaagttttgatgatacactataaaatctgataga 538  Q
    |||||||||||||||||| |||  ||||| || |||| |||||||||| || ||| ||||||||| |||||||| |||||    
T  51468776 aaatgtagatgaagatgatggaagaagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatctaataga 51468855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 538
Target Start/End: Original strand, 47533762 - 47533808
Alignment:
Q  492 aaaggaaataaattaagttttgatgatacactataaaatctgataga 538  Q
    |||| |||||||||| || ||| ||||||||||||||||||||||||    
T  47533762 aaagtaaataaattaggtgttggtgatacactataaaatctgataga 47533808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 45229482 - 45229558
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||| |||| ||| || |||  |||||||||| || ||| |||| || |||||||||||||||||    
T  45229482 aatgtagatgaagatgaaggaa-gaacaagaaactaaataaattaggtgttggtgatccattataaaatctgatagac 45229558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 51693382 - 51693310
Alignment:
Q  466 tagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||| |||| ||| || |||| |||||||||| || ||| ||||||||||||||||| |||||||    
T  51693382 tagacgaagatgatggaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatccgatagac 51693310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 34996643 - 34996730
Alignment:
Q  465 gtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||||| ||| || |||| |||||||||| || ||| ||||||||||||||||||||||||| ||  |||||||||    
T  34996643 gtagatgaagatgagggaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagaccttcgtaatccaac 34996730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 32348916 - 32348992
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| |||| ||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  32348916 aatgaagatgaagatgatggaa-gaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 32348992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 29466558 - 29466500
Alignment:
Q  251 gaatctggaattgatgaacgaaagaggaagaagagtttggataacagaattggaatgat 309  Q
    |||| ||||||||||||| | |||||||||||||||| |||||| ||||||||||||||    
T  29466558 gaatatggaattgatgaatggaagaggaagaagagttgggataaaagaattggaatgat 29466500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 11801218 - 11801297
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  ||||||| |||| |||||||||| || || ||||||||||||||||| ||||||||    
T  11801218 aatggagatgaagatgatggaagaagaataagaaagtaaataaattaggtgttaatgatacactataaaatttgatagac 11801297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 32348027 - 32347971
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  32348027 aagaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 32347971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 34995593 - 34995514
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||||||||  |||| || |||| ||||||||||  | ||| |||||||||||||||||||||||||    
T  34995593 aatgcagatgaagatgagggaagaagaagaagaaagtaaataaattagatgttggtgatacactataaaatctgatagac 34995514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 32712594 - 32712518
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||| ||||| || |||| |||||| ||| || ||| || ||||||||||||| ||||||||    
T  32712594 aatgtagatgaagatgaggg-aagaagaagaaagtaaataagttaggtgttggtggtacactataaaatttgatagac 32712518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 553
Target Start/End: Original strand, 3000675 - 3000762
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||| ||||     || |||| |||||||||| || ||  ||||||||||||||||||||||||| ||  |||||||||    
T  3000675 aatgtagatgaagatgatggaag----aagaaagtaaataaattaggtgttagtgatacactataaaatctgatagaccttcgtaatccaac 3000762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 539
Target Start/End: Original strand, 21095284 - 21095334
Alignment:
Q  489 aataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||| |||||||||| || ||| ||||||||||||||||||| |||||    
T  21095284 aataaagtaaataaattaggtgttggtgatacactataaaatctggtagac 21095334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 27719940 - 27719898
Alignment:
Q  497 aaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||| || ||| |||||||||||||||||||||||||    
T  27719940 aaataaattaggtgttggtgatacactataaaatctgatagac 27719898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 21094624 - 21094575
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatct 532  Q
    |||| |||||||| |||||||||| || ||| ||||||||||||||||||    
T  21094624 aagattaataaagtaaataaattaggtgttggtgatacactataaaatct 21094575  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 29466331 - 29466282
Alignment:
Q  330 tttttgagagtagaagacatgaagattggggttttaaaagcataatttga 379  Q
    |||||||||| | ||| ||||||||||||| |||||||| ||||||||||    
T  29466331 tttttgagagaataaggcatgaagattgggtttttaaaaacataatttga 29466282  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 462 - 555
Target Start/End: Complemental strand, 52522168 - 52522073
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaactg 555  Q
    ||||||||||||||||||||||  |||| || |||| |||||||||| || ||| ||||||||||||||||||||||||| |   |||||||||||    
T  52522168 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagacctccgtaatccaactg 52522073  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 553
Target Start/End: Original strand, 35759107 - 35759200
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    ||||||||||||||||||||||  |||| || |||| |||||||||| || ||| ||||||||| ||||||||||||||| ||  |||||||||    
T  35759107 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatctgatagacattcgtaatccaac 35759200  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 28777571 - 28777642
Alignment:
Q  467 agatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||| |||| ||| || |||| |||||||||| || |||||||||||||||||||||||||||||    
T  28777571 agatgaagatgatggaa-gaagaagaaagtaaataaattaggtgttgatgatacactataaaatctgatagac 28777642  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 28776690 - 28776611
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||| ||||  |||| || |||| |||||||||| || ||||||||||| |||||||||||||||||    
T  28776690 aatggagatgaagatgatggaagaagaagaagaaagtaaataaattaggtgttgatgatacattataaaatctgatagac 28776611  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 37610639 - 37610718
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| ||| |||||||||||||  |||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  37610639 aatgaagacgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 37610718  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 50879925 - 50879850
Alignment:
Q  466 tagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||| ||  |||| || |||||||| |||||| || ||| |||||||||||||||||||||||||    
T  50879925 tagatgaagatgaggaaagaagaagaagaaaggaaacaaattaggtgttggtgatacactataaaatctgatagac 50879850  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 539
Target Start/End: Complemental strand, 5689929 - 5689882
Alignment:
Q  492 aaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||||    
T  5689929 aaagtaaataaattaagtgttggtgatacactataaaatctgatagac 5689882  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 31937280 - 31937198
Alignment:
Q  462 aatgtagatgaagatgagggaa-----agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||     |||| || |||| ||| |||||| || ||| |||||||||||||||||||||||||    
T  31937280 aatgtagatgaagatgagggaagaagaagaagaagaaagtaaaaaaattaggtgttggtgatacactataaaatctgatagac 31937198  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 553
Target Start/End: Complemental strand, 35758245 - 35758153
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaac 553  Q
    |||||||||||||| |||||||  |||| || |||| |||||||||| || ||| ||||||||| ||||||||||||||| ||  |||||||||    
T  35758245 aatgtagatgaaga-gagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatctgatagacattcgtaatccaac 35758153  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 55210026 - 55209944
Alignment:
Q  462 aatgtagatgaagatgagggaa-----agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||     |||| ||||||| |||||||||| || ||| | |||||||||||| ||||||||||    
T  55210026 aatgtagatgaagatgagggaagaagaagaagaataaagtaaataaattaggtgttggtaatacactataaattctgatagac 55209944  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 47431066 - 47431142
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||| |||| ||| || |||| |||||||||| || | | |||||||||||||||||| ||||||    
T  47431066 aatgtagatgaagatgatggaa-gaagaagaaagtaaataaattaggtgtgggtgatacactataaaatctaatagac 47431142  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 17741049 - 17740993
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  17741049 aagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 17740993  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 19042369 - 19042313
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| |||||||||||||||||||||||||    
T  19042369 aagaagaagaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 19042313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 46903503 - 46903579
Alignment:
Q  462 aatgtagatgaagatgagggaaagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| ||||||| |||| |||| ||| || |||| |||||||||| || ||| |||||||||||||||||| ||||||    
T  46903503 aatgaagatgaaaatgatggaa-gaagaagaaagtaaataaattaggtgttggtgatacactataaaatctaatagac 46903579  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 552
Target Start/End: Original strand, 21729096 - 21729156
Alignment:
Q  492 aaaggaaataaattaagttttgatgatacactataaaatctgatagactttattaatccaa 552  Q
    |||| |||||||||| || |||||||||||||||||||| || ||||| ||  ||||||||    
T  21729096 aaagtaaataaattaggtgttgatgatacactataaaatatggtagaccttcataatccaa 21729156  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 43392848 - 43392769
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||| |||||||||||||||||  |||| || |||  |||||||||  || ||| || ||||||||||||||||||||||    
T  43392848 aatgaagatgaagatgagggaagaagaagaagaaaataaataaatttggtgttggtggtacactataaaatctgatagac 43392769  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 43393952 - 43394008
Alignment:
Q  483 aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||| || |||| |||||||||| || ||| ||||||||| |||||||||||||||    
T  43393952 aagaagaagaaagtaaataaattaggtgttggtgatacactgtaaaatctgatagac 43394008  T

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Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 104493 - 104414
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  |||| || |||| ||||||||||  | ||| |||||||||||||||||||||||||    
T  104493 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattagatgttggtgatacactataaaatctgatagac 104414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 2900 - 2981
Alignment:
Q  462 aatgtagatgaagatgagggaa--agaataataaa--ggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    ||||||||||||||||||||||  |||| || |||  | |||||||||| || ||| |||||||||||||||||||||||||    
T  2900 aatgtagatgaagatgagggaagaagaagaaaaaaaagtaaataaattaggtgttggtgatacactataaaatctgatagac 2981  T

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Target: scaffold0878; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 2010 - 1931
Alignment:
Q  462 aatgtagatgaagatgaggga--aagaataataaaggaaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||||||||||||||  ||||| || |||| |||||||||| || ||| |||||||||  ||||||| ||||||    
T  2010 aatgtagatgaagatgagggaagaagaagaagaaagtaaataaattaggtgttggtgatacactggaaaatctaatagac 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 9362 - 9320
Alignment:
Q  497 aaataaattaagttttgatgatacactataaaatctgatagac 539  Q
    |||||||||| || ||| |||||||||||||||||||||||||    
T  9362 aaataaattaggtgttggtgatacactataaaatctgatagac 9320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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