View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12511_low_21 (Length: 298)
Name: NF12511_low_21
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 2321262 - 2320981
Alignment:
| Q |
5 |
gtgtgccaacaaaaaatgccc-tggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttc |
103 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2321262 |
gtgtgccaacacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcgaagtttctgcaagttttcctctttcacttc |
2321163 |
T |
|
| Q |
104 |
ctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
203 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321162 |
ctccttctctccattgtcatcactaaccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccac |
2321063 |
T |
|
| Q |
204 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2321062 |
tgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttc |
2320981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 2303564 - 2303280
Alignment:
| Q |
1 |
ccgcgtgtgccaacaaaaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcac |
100 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| |||||||||||||| |
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| T |
2303564 |
ccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaattcttcctctttcac |
2303465 |
T |
|
| Q |
101 |
ttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| |
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|
| T |
2303464 |
ttcctccttctctccattctcatcaccacccatcacctcccgaatctcctccacaagcctcctctgcacttctgggtacttaaccaaattcgccataatc |
2303365 |
T |
|
| Q |
201 |
cactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactttc |
285 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2303364 |
cattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcactcaactttc |
2303280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 2293951 - 2293673
Alignment:
| Q |
1 |
ccgcgtgtgccaacaaaaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcac |
100 |
Q |
| |
|
||||||||| |||| ||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2293951 |
ccgcgtgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcac |
2293852 |
T |
|
| Q |
101 |
ttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
2293851 |
ttcctccttctctccattttcatcaccacccatcacctcccgaatctcctccacaagcctcccctgcacttctgggtacttcactacattcgccataatc |
2293752 |
T |
|
| Q |
201 |
cactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactca |
279 |
Q |
| |
|
||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2293751 |
cactgcaaactagtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactca |
2293673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 29 - 279
Target Start/End: Complemental strand, 2310254 - 2310004
Alignment:
| Q |
29 |
tggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccattgtcatcacta |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
2310254 |
tggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtcttcctctttcacttcctccttctctccattttcatcacca |
2310155 |
T |
|
| Q |
129 |
cccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccg |
228 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||| || | |
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|
| T |
2310154 |
cccatcacctcccgaatctcctccacaagcctccccttcacttctgggtacttcaccacattcgccataatccactccaaactagtggaagtagtgtctg |
2310055 |
T |
|
| Q |
229 |
tcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactca |
279 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2310054 |
tcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactca |
2310004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 2330817 - 2330555
Alignment:
| Q |
18 |
aaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttcctccttctctccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2330817 |
aaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttctctccag |
2330718 |
T |
|
| Q |
118 |
tgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaagcagtgga |
217 |
Q |
| |
|
||||| | |||||||||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
2330717 |
catcatcgccacccatcacctctgtaatctcctccacaagcttcccctgaacgtccgggtacttcaccaaattcgccataatccattgcaaagcggtgga |
2330618 |
T |
|
| Q |
218 |
agtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaa |
280 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
2330617 |
agtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaa |
2330555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 2327109 - 2326837
Alignment:
| Q |
11 |
caacaaaaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttcctccttc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
2327109 |
caacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctccttc |
2327010 |
T |
|
| Q |
111 |
tctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatccactgcaaag |
210 |
Q |
| |
|
||| || |||||| |||||| | ||| | |||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2327009 |
tctacaacaccatcaccacccatgaactccctaatctcctgcacaagcctcctttgaacgtccgggtacttcaccaaattcgccataatccaatgcaaag |
2326910 |
T |
|
| Q |
211 |
cagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaactt |
283 |
Q |
| |
|
| |||||||||||||| || ||| | ||||||||||||||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
2326909 |
cggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaactt |
2326837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2351140 - 2350861
Alignment:
| Q |
1 |
ccgcgtgtgccaacaaaaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcac |
100 |
Q |
| |
|
||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||| || |||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
2351140 |
ccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttcagatacaaaagtttctgcaaatcttcctctttcac |
2351041 |
T |
|
| Q |
101 |
ttcctccttctctccattgtcatcactacccatcacctcacgaatctcctccacaagcctcccctgcacttccgggtacttcaccaaattcgccataatc |
200 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||| | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
2351040 |
ttccaccttctctccatttccatcacgacccatcacctccctaatctcgtccacaagcctcccttgcacgtcggggtacttcaccaaatttgccataatc |
2350941 |
T |
|
| Q |
201 |
cactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcactcaa |
280 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||| | ||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
2350940 |
cattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaa |
2350861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 41127136 - 41127029
Alignment:
| Q |
11 |
caacaaaaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttcctccttc |
110 |
Q |
| |
|
||||| ||| ||||| ||||| |||| ||||| ||||||||||| ||| ||||| | |||| | || |||||||||||||||||||| | ||||| ||| |
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|
| T |
41127136 |
caacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttagatatggtaggttctgcaagtcttcctctttaatttccttattc |
41127037 |
T |
|
| Q |
111 |
tctccatt |
118 |
Q |
| |
|
||| |||| |
|
|
| T |
41127036 |
tcttcatt |
41127029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 26494681 - 26494607
Alignment:
| Q |
30 |
ggatgacgcctcaacccttccaaaaccacgcacttcaaatatcgaagtttctgcaagtcttcctctttcacttcc |
104 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||||| | | ||||| ||| ||||||||| |||||||| |
|
|
| T |
26494681 |
ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttcc |
26494607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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