View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_23 (Length: 286)
Name: NF12511_low_23
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 27203272 - 27203010
Alignment:
| Q |
1 |
gtactctagaacagtgaccaaaagcaaaaattaatagcaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaaaagttctc |
100 |
Q |
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| T |
27203272 |
gtactctagaacagtgaccaaaagcaaaaattaataggaaaattgataaattttatacgaactcacactgcatgaatcatattccatgtgaaaagtcctc |
27203173 |
T |
|
| Q |
101 |
atgttaaccaaatcgctcttaaaagcagcatcaactgagggaccatcattaccctgaactgtaaacaacacaccaaaaggtccaaaataatttcagcatt |
200 |
Q |
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| T |
27203172 |
atgttaaccaaatcgcccttaacagcagcatcaaccgagggaccatcattaccctgaactgtaaacaacacaccaaaagggccaaaataatttcagcatt |
27203073 |
T |
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| Q |
201 |
cttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
263 |
Q |
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| T |
27203072 |
cttaaaacacagcagtgccaaattaaccttaaacacatcattaaacatataagacgatgatgt |
27203010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 16421772 - 16421718
Alignment:
| Q |
60 |
aactcacactgcatgaatcatattccatgtgaaaagttctcatgttaaccaaatc |
114 |
Q |
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| T |
16421772 |
aactcacactgcatgcatcaaattccatgtgaaacgtcctcaagttaaccaaatc |
16421718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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