View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12511_low_26 (Length: 270)
Name: NF12511_low_26
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 9230541 - 9230436
Alignment:
| Q |
148 |
ccacgaattattattaatgatatgaaattgaaggtactcagtaaattaacctcatgaattatattaagaaaatgatggtataaacaaagtttatacatag |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230541 |
ccacgaattattattaatgatatgaaattgaaggtactcggtaaattaacctcatgaagtatattaagaaaatgatggtataaacaaagtttatacatag |
9230442 |
T |
|
| Q |
248 |
ttgatg |
253 |
Q |
| |
|
|||||| |
|
|
| T |
9230441 |
ttgatg |
9230436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 9171486 - 9171385
Alignment:
| Q |
17 |
atgaatgtttttgtccggaggggaaatctggaaatggaacaaaggaaggagggtgccacaaacaagatgtacttcctaaggtcgcaattggtaagcaact |
116 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||||||||||||||||||||||| || | || |||||| || | ||||| || ||||||||||| || |
|
|
| T |
9171486 |
atgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaagcacct |
9171387 |
T |
|
| Q |
117 |
aa |
118 |
Q |
| |
|
|| |
|
|
| T |
9171386 |
aa |
9171385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 9179468 - 9179367
Alignment:
| Q |
17 |
atgaatgtttttgtccggaggggaaatctggaaatggaacaaaggaaggagggtgccacaaacaagatgtacttcctaaggtcgcaattggtaagcaact |
116 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||||||||||||||||||||||| || | || |||||| || | ||||| || ||||||||||| || |
|
|
| T |
9179468 |
atgaatgtttctgtcctgatggacaatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaagcacct |
9179369 |
T |
|
| Q |
117 |
aa |
118 |
Q |
| |
|
|| |
|
|
| T |
9179368 |
aa |
9179367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 1816877 - 1816825
Alignment:
| Q |
22 |
tgtttttgtccggaggggaaatctggaaatggaacaaaggaaggagggtgcca |
74 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
1816877 |
tgtttttgtcccaaggggcaaaccggaaatggaacaaaggaaggagggtgcca |
1816825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 9201178 - 9201082
Alignment:
| Q |
15 |
tcatgaatgtttttgtccggaggggaaatctggaaatggaacaaaggaaggagggtgccacaaacaagatgtacttcctaaggtcgcaattggtaag |
111 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||||| || |||||| || || ||||||||||| || | ||||| |||||||||||| |
|
|
| T |
9201178 |
tcatgaatgtttttgtcctgatggacaatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaag |
9201082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 9117711 - 9117778
Alignment:
| Q |
20 |
aatgtttttgtccggaggggaaatctggaaatggaacaaaggaaggagggtgccacaaacaagatgta |
87 |
Q |
| |
|
|||| ||||||||| ||||| |||| || |||||||||| |||||||||||| || | |||||||||| |
|
|
| T |
9117711 |
aatgcttttgtccgaaggggcaatccggcaatggaacaagggaaggagggtgtcatacacaagatgta |
9117778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University