View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12511_low_29 (Length: 250)
Name: NF12511_low_29
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_29 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 39676186 - 39676390
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39676186 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
39676285 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676286 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
39676385 |
T |
|
| Q |
229 |
gtacc |
233 |
Q |
| |
|
||||| |
|
|
| T |
39676386 |
gtacc |
39676390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 10873683 - 10873483
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |
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|
| T |
10873683 |
ccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccata |
10873584 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| ||||||| |
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|
| T |
10873583 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaa |
10873484 |
T |
|
| Q |
229 |
g |
229 |
Q |
| |
|
| |
|
|
| T |
10873483 |
g |
10873483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 10878754 - 10878554
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |
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|
| T |
10878754 |
ccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccata |
10878655 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10878654 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaa |
10878555 |
T |
|
| Q |
229 |
g |
229 |
Q |
| |
|
| |
|
|
| T |
10878554 |
g |
10878554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 10883825 - 10883625
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10883825 |
ccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccata |
10883726 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10883725 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaa |
10883626 |
T |
|
| Q |
229 |
g |
229 |
Q |
| |
|
| |
|
|
| T |
10883625 |
g |
10883625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 10866622 - 10866822
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10866622 |
ccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgagatgccgata |
10866721 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10866722 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgacgggaatgagtacacggtgcccatggcaacaaccgaaggttgtttggttgcaa |
10866821 |
T |
|
| Q |
229 |
g |
229 |
Q |
| |
|
| |
|
|
| T |
10866822 |
g |
10866822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 10887743 - 10887543
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
10887743 |
ccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgagatgccgata |
10887644 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10887643 |
gggtttgttcaaattccggtgggtgttgccggtcctttgttgctcgacgggaatgaatacacggtgcccatggcaacaaccgaaggttgtttggttgcaa |
10887544 |
T |
|
| Q |
229 |
g |
229 |
Q |
| |
|
| |
|
|
| T |
10887543 |
g |
10887543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 29 - 232
Target Start/End: Original strand, 10046242 - 10046445
Alignment:
| Q |
29 |
ccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaata |
128 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |
|
|
| T |
10046242 |
ccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgata |
10046341 |
T |
|
| Q |
129 |
gggtttgttcagattccggtgggtgttgccggtcctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaa |
228 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10046342 |
ggatttgttcagattccggtgggagttgccggacctttgttgcttgatgggaaagagtacacggtgccgatggcaacgacggaaggttgtttggttgcaa |
10046441 |
T |
|
| Q |
229 |
gtac |
232 |
Q |
| |
|
|||| |
|
|
| T |
10046442 |
gtac |
10046445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39676183 - 39676149
Alignment:
| Q |
1 |
cctaatcacagcagcacgtcggcaatctccaagct |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676183 |
cctaatcacagcagcacgtcggcaatctccaagct |
39676149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 37948116 - 37948285
Alignment:
| Q |
63 |
gaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtc |
162 |
Q |
| |
|
|||||||||||| | ||||| |||||||| || | || ||||| || ||||| || ||||| |||||| | |||| |||||||||||||| || || | |
|
|
| T |
37948116 |
gaaggtttaccattagaaggatttgattacgaagcgattttagggcagtgttgtgaaatgccggtagggtatattcaaattccggtgggtgtggcgggac |
37948215 |
T |
|
| Q |
163 |
ctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtac |
232 |
Q |
| |
|
| |||||| | ||||| |||||||| || |||||||| || || ||||| ||||| ||||| ||||| |
|
|
| T |
37948216 |
cattgttgttggatggatttgaatacactgttccaatggcgactacagaagggtgtttggttgctagtac |
37948285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 232
Target Start/End: Complemental strand, 30709688 - 30709519
Alignment:
| Q |
63 |
gaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtc |
162 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
30709688 |
gaaggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgcgggtc |
30709589 |
T |
|
| Q |
163 |
ctttgttgctcgatggtaaagaatacaccgtgccaatggcaaccactgaaggttgtttagttgcaagtac |
232 |
Q |
| |
|
| ||||| | ||||| || ||||| ||||| ||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
30709588 |
cactgttgttagatggagttgagtacactgtgcccatggctaccactgaagggtgtcttgttgcaagtac |
30709519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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