View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_3 (Length: 460)
Name: NF12511_low_3
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 37 - 442
Target Start/End: Original strand, 13097532 - 13097937
Alignment:
| Q |
37 |
caaattactttgttgattcttttaatttagttcattgaaatctatatataatagacaaatctagaaacccaaaatctaaaattaaattacttttgtacac |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13097532 |
caaattactttgttgattcttttaatttagttcattgaaatctatatataatagacaaatctagaaacccaaaatctaaaattaaattacttttgtacac |
13097631 |
T |
|
| Q |
137 |
catttaattttgtatataagtttgaacataataaaatctagaaacttgtgccttaacaatctatggataccactactttaaaaggacaaaattaatgttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
13097632 |
aatttaattttgtatataagtttgaacataataaaatctcgaaacttgtgccttaacaagctatggataccactactttaaaaggacaacattaatgttc |
13097731 |
T |
|
| Q |
237 |
aaccatcacttctcatttcatttatctcttatcatttgttgcatnnnnnnntttctctcacatagaagaaactaaaaactatggggtacttaacatcttt |
336 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13097732 |
aaccatcacttctcatttcatttctctcttagcatttgttgcataaaaaaatttctctcacatagaagaaactaaaaactatggggtacttaagttcttt |
13097831 |
T |
|
| Q |
337 |
gttgactttcatttttatttttgctgatgtggtgttctatatgacaaaaggtgaaccactagttccagcattgttcatctttgaagactccattgtagat |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13097832 |
gttgactttcatttttatttttgctgatgtggtgttctatatgacaaaagatgaaccactagttccagcattgttcatctttggagactccattgtagat |
13097931 |
T |
|
| Q |
437 |
gtcggc |
442 |
Q |
| |
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|||||| |
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| T |
13097932 |
gtcggc |
13097937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 20602931 - 20603008
Alignment:
| Q |
53 |
ttcttttaatttagttcattgaaatctatatataatagacaaatctagaaacccaaaatctaaaattaaattactttt |
130 |
Q |
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|||||||||||| || |||| ||||||||||| | ||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
20602931 |
ttcttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaatctaaaattaaattagtttt |
20603008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 20592577 - 20592666
Alignment:
| Q |
349 |
ttttatttttgctgatgtggtgttctatatgacaaaaggtgaaccactagttccagcattgttcatctttgaagactccattgtagatgt |
438 |
Q |
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|||| |||||||| ||||||||||||||| ||||| || ||||| ||||||||||| | ||||| || | |||||||||||||||||| |
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| T |
20592577 |
ttttctttttgctactgtggtgttctatataacaaatggagaacctgtagttccagcacttttcatattcggagactccattgtagatgt |
20592666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 13094639 - 13094692
Alignment:
| Q |
295 |
cacatagaagaaactaaaaactatggggtacttaacatctttgttgactttcat |
348 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |
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| T |
13094639 |
cacatagaagaaactaataaatatggagtacttaagttctttgttgactttcat |
13094692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 20547226 - 20547271
Alignment:
| Q |
53 |
ttcttttaatttagttcattgaaatctatatataatagacaaatct |
98 |
Q |
| |
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||||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
20547226 |
ttcttttaatttagtccattcaaatctatatagaatagacaaatct |
20547271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 13094502 - 13094601
Alignment:
| Q |
165 |
taataaaatctagaaacttgtgccttaacaatctatggataccactactttaaaaggacaaaattaatgttcaaccatcacttctcatttcatttatctc |
264 |
Q |
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||||||||||| |||||| | ||||||| | ||||||||||| || || |||||||||| | ||||||||||| | |||||||||||||| || |||| |
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| T |
13094502 |
taataaaatctcgaaactagagccttaataggctatggataccggta-ttaaaaaggacaacactaatgttcaactaccacttctcatttcacttctctc |
13094600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 438
Target Start/End: Original strand, 20547495 - 20547610
Alignment:
| Q |
323 |
tacttaacatctttgttgactttcatttttatttttgctgatgtggtgttctatatgacaaaaggtgaaccactagttccagcattgttcatctttgaag |
422 |
Q |
| |
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||||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| || || || ||||| ||||||||||| | ||||| || || |
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| T |
20547495 |
tacttaagttctttgatgactttattttttctttttgctattgtggtgttctatataaccaatggagaacctgtagttccagcacttttcatattcagag |
20547594 |
T |
|
| Q |
423 |
actccattgtagatgt |
438 |
Q |
| |
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||||||| |||||||| |
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| T |
20547595 |
actccatagtagatgt |
20547610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 51512045 - 51512080
Alignment:
| Q |
1 |
tgcaatatccctaccaactgagctcaggtcacgggg |
36 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |
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| T |
51512045 |
tgcaatatccctaccaactgagctcagctcacgggg |
51512080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 20592328 - 20592373
Alignment:
| Q |
53 |
ttcttttaatttagttcattgaaatctatatataatagacaaatct |
98 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| ||||||||||||| |
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| T |
20592328 |
ttcttttaatttagtccattcaaatttatatagaatagacaaatct |
20592373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19985534 - 19985500
Alignment:
| Q |
1 |
tgcaatatccctaccaactgagctcaggtcacggg |
35 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
19985534 |
tgcaatatccctaccaactgagctaaggtcacggg |
19985500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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