View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_31 (Length: 243)
Name: NF12511_low_31
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 43049098 - 43049331
Alignment:
| Q |
1 |
cgtaaagaaatgaaatccctatgaatactgttgtgccaagaaaacgatcagatgctgacattagtagaaatcaacatcacacttggtcctagtgaatgtt |
100 |
Q |
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| T |
43049098 |
cgtaaagaaatcaaatccttatgaatactgttgtgccaagaaaacgatcagatgctgacattagtagaaatcaacatcacacttggtcctagtgaatgtt |
43049197 |
T |
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| Q |
101 |
gcattgctaattttagaactcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43049198 |
gcattgctaattttagaactcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaa |
43049297 |
T |
|
| Q |
201 |
agtaaagcctcacatagatatcataatcttcatc |
234 |
Q |
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| T |
43049298 |
agtaaagcctcacatagatatcataaacttcatc |
43049331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 43062002 - 43062108
Alignment:
| Q |
120 |
tcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
219 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| | ||||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
|
| Q |
220 |
atcataa |
226 |
Q |
| |
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| ||||| |
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| T |
43062102 |
accataa |
43062108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 43024059 - 43024178
Alignment:
| Q |
113 |
ttagaactcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctca |
212 |
Q |
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|||||| |||||||||||||||||||||||||||| || || ||| | |||| |||||| || ||| |||||||| ||||| ||||| || ||| |
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| T |
43024059 |
ttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttca |
43024158 |
T |
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| Q |
213 |
catagatatcataatcttca |
232 |
Q |
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|||||||||||||| ||||| |
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| T |
43024159 |
catagatatcataaacttca |
43024178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 43054750 - 43054857
Alignment:
| Q |
119 |
ctcaaaggaactttgaggtcacatttcaccttaggcttgtaatcaccagatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacataga |
218 |
Q |
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|||||||||||| ||||||| ||||| |||||||| ||| | | | ||||| | || |||||| | ||||||||||||||||| ||| ||||||||| |
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| T |
43054750 |
ctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacataga |
43054849 |
T |
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| Q |
219 |
tatcataa |
226 |
Q |
| |
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|||||||| |
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| T |
43054850 |
tatcataa |
43054857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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