View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12511_low_4 (Length: 442)
Name: NF12511_low_4
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 34962264 - 34962678
Alignment:
| Q |
15 |
aatatttgctccaaagaagagacggttaacgagaaccacaggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962264 |
aatatttgctccaaagaagagacggttaacgagaaccacaggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacatt |
34962363 |
T |
|
| Q |
115 |
ttgatcccaatggagtcacgagtgttgtcacgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962364 |
ttgatcccaatggagtcacgagtgttgtcacgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgctt |
34962463 |
T |
|
| Q |
215 |
ccatcctctccgtgaaatcgatcggatcagtctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962464 |
ccatcctctccgtgaaatcgatcggatcagtctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaa |
34962563 |
T |
|
| Q |
315 |
aagtggtgtactcctccgtccttgcctcgctgctgccgatgattccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactg |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962564 |
aagtggtgtactcctccgtccttgcctcgccgctgccgatgattccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactg |
34962663 |
T |
|
| Q |
415 |
tactcactaatgttg |
429 |
Q |
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||||||||||||||| |
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| T |
34962664 |
tactcactaatgttg |
34962678 |
T |
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