View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12511_low_5 (Length: 431)
Name: NF12511_low_5
Description: NF12511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12511_low_5 |
 | |
|
| [»] scaffold0187 (4 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 37855719 - 37855302
Alignment:
| Q |
11 |
cagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855719 |
cagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37855620 |
T |
|
| Q |
109 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37855619 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggccacactttg |
37855520 |
T |
|
| Q |
209 |
ttatcatatgaagcattatcataataatac---------cctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855519 |
ttatcatatgaagcattatcataataataccctcctcctcctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
37855420 |
T |
|
| Q |
300 |
tagatgacttcctttgattgtttcctcccattttactcactagttaggagagagtgatgagtggtgactcttagtgactagataacaattgaatgaagga |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855419 |
tagatgacttcctttgattgtttcctcccatttcactcactagttaggagagagtgatgagtggtgactcttagtgactagataacaattgaatgaagga |
37855320 |
T |
|
| Q |
400 |
agtgtgttatgttgtgct |
417 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37855319 |
agtgtgttatgttgtgct |
37855302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 37867907 - 37867571
Alignment:
| Q |
11 |
cagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867907 |
cagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
37867808 |
T |
|
| Q |
109 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37867807 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggccacactttg |
37867708 |
T |
|
| Q |
209 |
ttatcatatgaagcattatcataataatac---------cctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867707 |
ttatcatatgaagcattatcataataataccctcctcctcctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
37867608 |
T |
|
| Q |
300 |
tagatgacttcctttgattgtttcctcccattttact |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867607 |
tagatgacttcctttgattgtttcctcccattttact |
37867571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 37881945 - 37881615
Alignment:
| Q |
11 |
cagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatac |
110 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881945 |
cagagaagtacatacaaattaaaaatggataaacagaaaataatgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatac |
37881846 |
T |
|
| Q |
111 |
gtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttgtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37881845 |
gtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggccacactttgtt |
37881746 |
T |
|
| Q |
211 |
atcatatgaagcattatcataataatac---------cctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgattta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881745 |
atcatatgaagcattatcataataataccctcctcctcctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgattta |
37881646 |
T |
|
| Q |
302 |
gatgacttcctttgattgtttcctcccattt |
332 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
37881645 |
gatgacttcctttgactgtttcctcccattt |
37881615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 37911893 - 37911553
Alignment:
| Q |
14 |
agaggtacaaacaaattaaaa----atggataaacagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagaaa |
107 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911893 |
agaggtataaacaaattaaaagtggatggattaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaa |
37911794 |
T |
|
| Q |
108 |
tacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacacttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37911793 |
tacgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggccacacttt |
37911694 |
T |
|
| Q |
208 |
gttatcatatgaagcattatcataataatac---------cctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911693 |
gttatcatatgaagcattatcataataataccctcctcctcctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgat |
37911594 |
T |
|
| Q |
299 |
ttagatgacttcctttga---ttgtttcctcccattttact |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37911593 |
ttagatgacttcctttgattgttgtttcctcccattttact |
37911553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 27185 - 27524
Alignment:
| Q |
11 |
cagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27185 |
cagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgaccttggcaatgaatttgagattcagaaat |
27284 |
T |
|
| Q |
109 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27285 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggccacactttg |
27384 |
T |
|
| Q |
209 |
ttatcatatgaagcattatcataataatac---------cctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27385 |
ttatcatatgaagcattatcataataataccctcctcctcctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatt |
27484 |
T |
|
| Q |
300 |
tagatgacttcctttga---ttgtttcctcccattttact |
336 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27485 |
tagatgacttcctttgattgttgtttcctcccattttact |
27524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 16857 - 17254
Alignment:
| Q |
11 |
cagagaggtacaaacaaattaaaaatggataaacagaaaagattgttcgtat--cctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16857 |
cagagaggcacaaacaaattaaaaatggataaacagaaaataatgttcgtatatcctactgatcaggttgagcttggcaatgaatttgagattcagaaat |
16956 |
T |
|
| Q |
109 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
16957 |
acgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggccatactttg |
17056 |
T |
|
| Q |
209 |
ttatcatatgaagcattatcataataat------accctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatttag |
302 |
Q |
| |
|
||| |||| | | ||| ||||||||| | ||||||||||||||||| |||||||| || ||||||||||| ||||||| |||||||||||| |
|
|
| T |
17057 |
ttagcataagcaccatgatcataatactctcctccacctctttgcttgttactactagatttaaaaatgttgaaaacagacctga---atgatgatttag |
17153 |
T |
|
| Q |
303 |
atgacttcctttgattgtttcctcccattttactcactagttaggagagagtgatgagtggtgactcttagtgactagataacaattgaatgaaggaagt |
402 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17154 |
aagacttcctttgattgtttcctcccatt----tcactagttagtatagagtggtgagtg----------atgactagataacaattgaatgaaggaagt |
17239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 417
Target Start/End: Original strand, 6530 - 6926
Alignment:
| Q |
14 |
agaggtacaaacaaattaaaa----atggataaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaata |
109 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6530 |
agaggtataaacaaattaaaagtggatggattaacagaaaagattgttcgtatcctactgatcaggttgagcttggcaatgaatttgagattcagaaatt |
6629 |
T |
|
| Q |
110 |
cgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggccacactttgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
6630 |
cgtttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggccatactttgt |
6729 |
T |
|
| Q |
210 |
tatcatatgaagcattatcataataat------accctctttgcttgttactgctagatttgaatatgttgaaaactgacctgaatgatgatgatttaga |
303 |
Q |
| |
|
|| |||| | | ||| ||||||||| | ||||||||||||||||| |||||||| || ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
6730 |
tagcataagcaccatgatcataatactctcctccacctctttgcttgttactactagatttaaaaatgttgaaaacagacctga---atgatgatttaga |
6826 |
T |
|
| Q |
304 |
tgacttcctttgattgtttcctcccattttactcactagttaggagagagtgatgagtggtgactcttagtgactagataacaattgaatgaaggaagtg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6827 |
agacttcctttgattgtttcctcccatt----tcactagttagtatagagtggtgagtg----------atgactagataacaattgaatgaaggaagtg |
6912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 1 - 57
Alignment:
| Q |
283 |
cctgaatgatgatgatttagatgacttcctttga---ttgtttcctcccattttact |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
1 |
cctgaatgatgatgatttagatgacttcctctgattgttgtttcctcccattttact |
57 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 336
Target Start/End: Original strand, 9239670 - 9239833
Alignment:
| Q |
182 |
ctgtcttcatcacttggccacactttgttatcatatgaagcattatcataataataccctc---------tttgcttgttactgctagatttgaatatgt |
272 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9239670 |
ctgtcttcatcactaggccacactttgttatcatatgaagcattatcataataataccctcctcctcctctttgcttgttattgctagatttgaatatgt |
9239769 |
T |
|
| Q |
273 |
tgaaaactgacctgaatgatgatgatttagatgacttcctttgattgtttcctcccattttact |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9239770 |
tgaaaactgacctgaatgatgatgatttagatgacttcctttgattgtttcctcccattttact |
9239833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 45759321 - 45759409
Alignment:
| Q |
113 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactgcctctgtcttcatcacttggcca |
201 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||| ||||| |
|
|
| T |
45759321 |
ttcttgtatcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
45759409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University