View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12512_high_4 (Length: 241)
Name: NF12512_high_4
Description: NF12512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12512_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 4903464 - 4903301
Alignment:
| Q |
19 |
gggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatcc |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4903464 |
gggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcatccaacctccaaatcc |
4903365 |
T |
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| Q |
119 |
aatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903364 |
aatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa |
4903301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 9336312 - 9336371
Alignment:
| Q |
182 |
agtccctggtataagtatacgtgtcatgtattcattattgagggatatttggttaggata |
241 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
9336312 |
agtctctggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggata |
9336371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
| Q |
54 |
tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc |
153 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||| |||| |||| || | || |||| |||||| |
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| T |
1556905 |
tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc |
1556806 |
T |
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| Q |
154 |
aaatcctc |
161 |
Q |
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|||||||| |
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| T |
1556805 |
aaatcctc |
1556798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 22154072 - 22154235
Alignment:
| Q |
19 |
gggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatcc |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |
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| T |
22154072 |
gggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatcc |
22154171 |
T |
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| Q |
119 |
aatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa |
182 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || | |||||| ||||||||||| |
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| T |
22154172 |
aatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtgaagaagtaa |
22154235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 22209987 - 22210150
Alignment:
| Q |
19 |
gggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatcc |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||||| |||||||||||||||| |
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| T |
22209987 |
gggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaatttattttattgacaaagcaccttcctcatccaacctccaaatcc |
22210086 |
T |
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| Q |
119 |
aatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatgaagaagtaa |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || | |||||| ||||||||||| |
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| T |
22210087 |
aatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtgaagaagtaa |
22210150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 34821782 - 34821847
Alignment:
| Q |
48 |
catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctcca |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
34821782 |
catcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacctcca |
34821847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 53561879 - 53561813
Alignment:
| Q |
48 |
catcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaa |
114 |
Q |
| |
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|||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| |||||| |
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| T |
53561879 |
catcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaa |
53561813 |
T |
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