View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12512_low_1 (Length: 457)
Name: NF12512_low_1
Description: NF12512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12512_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 6 - 449
Target Start/End: Original strand, 3866347 - 3866784
Alignment:
| Q |
6 |
gttgttgttgttgtttacctgttaattttaccaaccacctcaaattcaatcggttagtttatcagttatatgctataaatttatccgcaatcaactaact |
105 |
Q |
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| T |
3866347 |
gttgttgttgttgttcacctgttaattttaccaaccacctcaaattcaatcagttagtttatcagttatatgctataaatttatccgcaatcaactaact |
3866446 |
T |
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| Q |
106 |
tatccgcgacttcattttattaaacagaatcttaatgataactttgatcatgtgatatagttggagcatgagaacattctagccaaagaaaaatgaacaa |
205 |
Q |
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| T |
3866447 |
tatccgcgacttcattttattaaacagaatcttaatgataactttgatcatgtgatatagttggagcatgagaacattctagccaaagaaaaatgaacaa |
3866546 |
T |
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| Q |
206 |
taaaaaataaatcttgcaatgtaataaccgtctctggacaagcattaaataggacaggatgacactgtatagtgtatacattaagatatgaagatttaga |
305 |
Q |
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| T |
3866547 |
taaaaaataaatcttgcaatgtaataaccgtctctggacaagcattaaataggacaggatgacactgtatagtgtatgcattaagatatgaagatttaga |
3866646 |
T |
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| Q |
306 |
tagacagaaaatgttcaagaaaataaattctaaaatttataaatggatagcaaccaaatgttcctggtcatgactcatgatgaggaacataggggctggg |
405 |
Q |
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| T |
3866647 |
tagacagaaaatgttcaagaaaataaattctaaaatttataaatggatagcaaccaaatgttcctggtcatgactcatgatgaggaacata------ggg |
3866740 |
T |
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| Q |
406 |
gctgaagattttccccttgttagcttccttcttctccctatgct |
449 |
Q |
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| T |
3866741 |
gctgaagattttccccttgttagcttccttcttctccttatgct |
3866784 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 4149089 - 4149129
Alignment:
| Q |
28 |
taattttaccaaccacctcaaattcaatcggttagtttatc |
68 |
Q |
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| T |
4149089 |
taattttaccaaacactgcaaattcaatcggttagtttatc |
4149129 |
T |
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