View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12512_low_2 (Length: 383)
Name: NF12512_low_2
Description: NF12512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12512_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 175 - 368
Target Start/End: Original strand, 10526524 - 10526724
Alignment:
| Q |
175 |
tcaatgtttataccagaggcattaatcctaagagtgacatgtctcagttctgattccctcatcccattggaaaaaagctgcaacaggtaaataaacactg |
274 |
Q |
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| T |
10526524 |
tcaatgtttataccagaggcattaattctaagggtgacatgtctcagttccgattccctcatcccattcgaaaaaagctgcaaaaggtaaataaacactg |
10526623 |
T |
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| Q |
275 |
ctaagaaaacaaatttttggcaaaactatacaatg-------taaagatatagagatcttggtctgccttatagaagaacggacttttagcagccaagat |
367 |
Q |
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| T |
10526624 |
ctaagaaaacatatttttggcagaactatacaatgtacaatataaagatatagagaacttggtctaccttatagaagaacgggcttttagcagccaagat |
10526723 |
T |
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| Q |
368 |
c |
368 |
Q |
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| T |
10526724 |
c |
10526724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 22996642 - 22996503
Alignment:
| Q |
19 |
gtactgtcctatatgctaaaaattcaaataacttattcagatgatgactcataagagaataaatgtgctaaaaatttcaatgcatatcatgtaatgcagc |
118 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
22996642 |
gtactgtcctatatgctaaaaatccaaataacttatatagatgatgactca--agagaataattgtgataaaaatttcaa--catatcatgtaatgcagc |
22996547 |
T |
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| Q |
119 |
tgatctaagattcaaaccatctcgttaaaatgaaatagagctat |
162 |
Q |
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| T |
22996546 |
tgatctaagattcaaaccgtctcgttaaaatgaaatagagctat |
22996503 |
T |
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