View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12512_low_3 (Length: 321)
Name: NF12512_low_3
Description: NF12512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12512_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 3655690 - 3655552
Alignment:
| Q |
153 |
tctaattggtatttggtgctgtaaattaaatggatttgtaatgctaccttctcaacaattattgaattatttccatttgttttctgaatgttagttgtaa |
252 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655690 |
tctaattggtatttggttctgtaaattaaatggatttgcaatgctcccttctcaacaattattgaattatttccatttgttttctgaatgttagttgtaa |
3655591 |
T |
|
| Q |
253 |
tcacttatcacgtgaaaatcgcagcattaaataggattt |
291 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3655590 |
tcacttatcacgtgaaaatcgcaacattaaataggattt |
3655552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 3657343 - 3657170
Alignment:
| Q |
16 |
tgccacttaaaatggagagcaggacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaattatcatttaaggctttgtttgtttacatt |
115 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3657343 |
tgccgcttaaaatggagagcaagacttgaagagtaatggtgtgaacaatttgtcgcgaaatgtcataaaattatcatttaaggctttgtttgtttacatt |
3657244 |
T |
|
| Q |
116 |
tgatttgtaatgtttgact-----------gaacttgattggactttgtctaattggtatttggtgctgtaaat |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
3657243 |
tgatttgtaatgtttgactgtattctaggagaacttgattggactctgtctaatcggtatttggttctgtaaat |
3657170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 3647738 - 3647577
Alignment:
| Q |
153 |
tctaattggtatttggtgctgtaaattaaatggatttgtaatgctaccttctcaacaattattgaattatttccatttgttttctgaatgttagttgt-- |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3647738 |
tctaattggtatttggttttgtaaattaaatggatttgtaatgctcccttctcaacaatcattgaattatttccatttgttttctggatgttagttgtaa |
3647639 |
T |
|
| Q |
251 |
-------aatcacttatcacgtgaaaatcgcagcattaaataggatttactaaccttttaat |
305 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3647638 |
tgtaatgaatgacttatcacgtgaaaatcgcaacattaaataggatttactaaccttttaat |
3647577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 3649184 - 3649140
Alignment:
| Q |
73 |
aaatgtcataaaattatcatttaaggctttgtttgtttacatttg |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
3649184 |
aaatgtcataacattatcatgtaaggctttgtttgtttacatttg |
3649140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 36164579 - 36164535
Alignment:
| Q |
73 |
aaatgtcataaaattatcatttaaggctttgtttgtttacatttg |
117 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
36164579 |
aaatgtcataacattatcatgtaaggctttgattgtttacatttg |
36164535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University