View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_high_18 (Length: 270)
Name: NF12513_high_18
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 13131249 - 13131492
Alignment:
| Q |
20 |
tatagcctttagtgcttgatgaaaagtaaccacttcccactgtggagactgttagctgcatg--acattaatttaagtggttgattcaaagttaatatgc |
117 |
Q |
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| T |
13131249 |
tatagcctttagtgcttgatgaaaagtaaccacttcccactgtggagactgttagctgcatgtgaaattaatttaagtggttgattcaaagttaatatgc |
13131348 |
T |
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| Q |
118 |
aggtggttctagtctgtgaaaggaccataccatgcattatgagctggtgggaagaaaaagtgatgtgccttcatgacttgatttcctcatttgaaatttg |
217 |
Q |
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| T |
13131349 |
aggtggttcttgtctgtgaaaggacgataccatgcattatgagttggtgggaagaaaaagtgatgtgccttcatgacttgatctcctcatttgaaagttg |
13131448 |
T |
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| Q |
218 |
gggcttcttcaacaaagttttctcatcttgttctttcttcttctc |
262 |
Q |
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| T |
13131449 |
agg-ttcttcaacaaagttttctcatcttgttctttcttcttctc |
13131492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 13136323 - 13136260
Alignment:
| Q |
84 |
attaatttaagtggttgattcaaagttaatatgcaggtggttctagtctgtgaaaggaccatac |
147 |
Q |
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| T |
13136323 |
attaatataagttgttggttcaaaattaatatacaggtggttctcgtcggtgaaaggacaatac |
13136260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 17981185 - 17981224
Alignment:
| Q |
222 |
ttcttcaacaaagttttctcatcttgttctttcttcttct |
261 |
Q |
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| T |
17981185 |
ttcttcaacaaagttttctcgtcttgttctttctttttct |
17981224 |
T |
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