View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_high_23 (Length: 249)
Name: NF12513_high_23
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_high_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 9298667 - 9298913
Alignment:
| Q |
5 |
gagagagaagaaatgaaatcaaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaat |
104 |
Q |
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| T |
9298667 |
gagagaaatgaaatgaaatcaaacctatgaaagtgtatgtatagtccatggaagcatataattggggggaatgaagcctggtccgagaatactttacaat |
9298766 |
T |
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| Q |
105 |
ccatgaccacaaatttgcattagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagag |
204 |
Q |
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| T |
9298767 |
ccatgaccacaaatttgcattagatcgagaagaaagcgtcctcgagccagacaacattcccctcaaaaaataaagcttcccaatagtctttttcttagag |
9298866 |
T |
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| Q |
205 |
ttttgtaatggt--cacacacacactttgtgttctcttttgaactct |
249 |
Q |
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| T |
9298867 |
ttttgtaatggtcacacacacacactttgtgttctcttttgaactct |
9298913 |
T |
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