View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_high_24 (Length: 237)
Name: NF12513_high_24
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 28656255 - 28656038
Alignment:
| Q |
1 |
tttagttggattttgattttgagtatgtgtttgtagatgcatatgtataagcatgtatgtttcttattctgcagttgattttgattttgagtatgatttt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28656255 |
tttagttggattatgattttgagtatgtgtttgtagatgcatatgtataaacatgtatgtttcttattctgcagttgattttgattttgagtatgatttt |
28656156 |
T |
|
| Q |
101 |
gatttcacataaaccagccactaaaatttatgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
28656155 |
gatttcacataaaccagccactaaaatttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgt |
28656056 |
T |
|
| Q |
201 |
ttgatttggagagatgtg |
218 |
Q |
| |
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|||||||| ||||||||| |
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| T |
28656055 |
ttgatttgaagagatgtg |
28656038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 31281675 - 31281458
Alignment:
| Q |
1 |
tttagttggattttgattttgagtatgtgtttgtagatgcatatgtataagcatgtatgtttcttattctgcagttgattttgattttgagtatgatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31281675 |
tttagttggattttgattttgagtatgtgtttgtagatgcatatgtataaacatgtatgtttcttattctgcagttgattttgattttgagtatgatttt |
31281576 |
T |
|
| Q |
101 |
gatttcacataaaccagccactaaaatttatgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgt |
200 |
Q |
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| T |
31281575 |
gatttcacataaatcagccactaaaatttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgt |
31281476 |
T |
|
| Q |
201 |
ttgatttggagagatgtg |
218 |
Q |
| |
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|||||||| ||||||||| |
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| T |
31281475 |
ttgatttgaagagatgtg |
31281458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 55425040 - 55425245
Alignment:
| Q |
1 |
tttagttggattttgattttgagtatgtgtttgtagatgcatatgtataagcatgtatgtttcttattctgcagttgattttgattttgagtatgatttt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
55425040 |
tttagttggattttgattttgagcatgtgtttgtagatgcatatgtataaatatgtatgtttcttattctgcagttgattttgat------------ttt |
55425127 |
T |
|
| Q |
101 |
gatttcacataaaccagccactaaaatttatgtttcttattcagcagttgaaannnnnnnaagtcggaatattctccataaagttactttcttgttgtgt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
55425128 |
gatttcacataaatcagccactaaaatttatgtttcttattctgcagttgaaatttttttaagtcgaaatattctccataaagttactttcttgttgtgt |
55425227 |
T |
|
| Q |
201 |
ttgatttggagagatgtg |
218 |
Q |
| |
|
|||||||| ||||||||| |
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| T |
55425228 |
ttgatttgaagagatgtg |
55425245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 48923912 - 48923870
Alignment:
| Q |
15 |
gattttgagtatgtgtttgtagatgcatatgtataagcatgta |
57 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48923912 |
gattttgagtatgtgtttgtagatgcatatgtataaacatgta |
48923870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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