View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_high_7 (Length: 492)
Name: NF12513_high_7
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 1865565 - 1866032
Alignment:
| Q |
18 |
atcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatcagttgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865565 |
atcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatcagttgg |
1865664 |
T |
|
| Q |
118 |
ggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgctgatggaaaagttgcgggg-ttaatccaaatatcggagatgcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1865665 |
ggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgctgatggaaaagttgcgggggttaatccaaatatcggagatgcat |
1865764 |
T |
|
| Q |
217 |
ctgttacaccaatcactaatgttgaacctaactcacgttctatgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865765 |
atgttacaccaatcactaatgttgaacctaactcacgttctgtgaatggagcaattctggatcatacaaagacttcttctaatgaactattgtctagaaa |
1865864 |
T |
|
| Q |
317 |
ttttagctttccagaagagtcttctcatgcttctttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgtta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865865 |
ttttagctttccagaagagtcttctcatgcttctttgtttttaggtatgtattctctcttatgtttatgtggattaatgtgacccatttttcaattgtta |
1865964 |
T |
|
| Q |
417 |
catataaaaatgtattcttagttacaaagtatagtttgaattaatcaatgcaggtagtagttcatctc |
484 |
Q |
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| T |
1865965 |
catataaaaatgtattcttagttacaaagtatagtttgaattaatcaatgcaggtagtagttcatctc |
1866032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 1865310 - 1865510
Alignment:
| Q |
18 |
atcatctggtattattgatatgtcttttcatggagatatttcaagtgtgcc---ttataatactcaaaatacaaacatgagtctacaacaaggaatcagt |
114 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865310 |
atcatccggtattattgatatgtcttttcatggagatatttcaaatgtgtcgacttataatactcaaaatacaaacatgagtctacaacaaggaatcagt |
1865409 |
T |
|
| Q |
115 |
tggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgctgatggaaaagttg-cggggttaatccaaatatcggagatg |
213 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||||||||||| |
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| T |
1865410 |
gggggggcaaacatatcaaaacctggatattcaagttcttctcctctcatgtttggcattgatggaaaagctgtagaggttaatccaaatatcggagatg |
1865509 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
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|
| T |
1865510 |
c |
1865510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 35440813 - 35440700
Alignment:
| Q |
74 |
atactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgc |
173 |
Q |
| |
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||||||| || ||||||||| || | ||||||||||||| | | ||| |||| |||||||||| |||||||||||| |||||||| |||||||||||| |
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| T |
35440813 |
atactcataacacaaacatgggtgtgcaacaaggaatcaatggtgggatgaacacatcaaaacctggatattcaagttattctcctcacatgtttggtgc |
35440714 |
T |
|
| Q |
174 |
tgatggaaaagttg |
187 |
Q |
| |
|
| ||||||| |||| |
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|
| T |
35440713 |
tcatggaaatgttg |
35440700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 35440960 - 35440916
Alignment:
| Q |
143 |
attcaagttcttctcctctcatgtttggtgctgatggaaaagttg |
187 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35440960 |
attcaagtttttctcctcacatgtttggtgctgatggaaaagttg |
35440916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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