View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12513_low_1 (Length: 701)

Name: NF12513_low_1
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12513_low_1
NF12513_low_1
[»] chr8 (11 HSPs)
chr8 (1-659)||(7027233-7027894)
chr8 (521-627)||(9492446-9492552)
chr8 (505-627)||(19237854-19237976)
chr8 (505-627)||(19311038-19311160)
chr8 (503-623)||(8970386-8970506)
chr8 (159-309)||(2977308-2977458)
chr8 (506-627)||(14154365-14154486)
chr8 (533-627)||(38141436-38141530)
chr8 (540-627)||(25481769-25481856)
chr8 (502-627)||(2537617-2537742)
chr8 (46-134)||(2977160-2977247)
[»] chr5 (3 HSPs)
chr5 (502-627)||(32401511-32401636)
chr5 (503-599)||(14808517-14808613)
chr5 (527-625)||(27214000-27214098)
[»] scaffold0902 (1 HSPs)
scaffold0902 (505-618)||(2253-2366)
[»] chr4 (14 HSPs)
chr4 (506-625)||(17318528-17318647)
chr4 (503-627)||(40756230-40756354)
chr4 (507-627)||(29907639-29907759)
chr4 (503-627)||(9741792-9741916)
chr4 (506-627)||(7104095-7104213)
chr4 (507-627)||(43472919-43473039)
chr4 (503-616)||(33142990-33143106)
chr4 (527-627)||(11422595-11422693)
chr4 (503-627)||(50430028-50430152)
chr4 (540-604)||(9745285-9745349)
chr4 (503-604)||(44527727-44527828)
chr4 (521-620)||(42181504-42181603)
chr4 (506-626)||(2576953-2577073)
chr4 (514-592)||(25143991-25144069)
[»] scaffold0578 (1 HSPs)
scaffold0578 (502-627)||(4266-4391)
[»] chr2 (5 HSPs)
chr2 (502-627)||(5007287-5007412)
chr2 (503-627)||(17539144-17539268)
chr2 (540-627)||(20559415-20559502)
chr2 (594-627)||(23497211-23497244)
chr2 (508-599)||(5953178-5953269)
[»] chr6 (4 HSPs)
chr6 (503-627)||(29618375-29618499)
chr6 (509-627)||(35241656-35241774)
chr6 (512-597)||(1377772-1377857)
chr6 (512-597)||(1385520-1385605)
[»] chr1 (3 HSPs)
chr1 (522-627)||(18746173-18746277)
chr1 (521-627)||(43544000-43544106)
chr1 (504-627)||(2740030-2740153)
[»] chr7 (6 HSPs)
chr7 (505-627)||(11790380-11790502)
chr7 (526-627)||(25616224-25616325)
chr7 (502-586)||(14069053-14069137)
chr7 (502-586)||(14379081-14379165)
chr7 (506-627)||(21416800-21416921)
chr7 (527-604)||(31001741-31001818)
[»] scaffold0129 (1 HSPs)
scaffold0129 (528-627)||(44499-44598)
[»] scaffold0785 (1 HSPs)
scaffold0785 (540-627)||(488-575)
[»] chr3 (9 HSPs)
chr3 (503-621)||(1661220-1661338)
chr3 (502-620)||(55455650-55455768)
chr3 (506-627)||(19624673-19624794)
chr3 (508-598)||(9490708-9490798)
chr3 (540-627)||(31497133-31497220)
chr3 (506-627)||(46513376-46513497)
chr3 (536-592)||(3362776-3362832)
chr3 (540-604)||(9606588-9606652)
chr3 (540-604)||(9600943-9601007)
[»] scaffold0524 (1 HSPs)
scaffold0524 (511-619)||(9648-9756)


Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Original strand, 7027233 - 7027894
Alignment:
Q  1 atcttcacactgtcagttcagttaatttgagtcaaatatctcagtt---acgagatcctcatgatgatgcatatttattaatcaaagagagattttactg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7027233 atcttcacactgtcagttcagttaatttgagtcaaatatctcagttgctacgagatcctcatgatgatgcatatttattaatcaaagagagattttactg 7027332  T
Q  98 tgccttatcttgttgtttgtgatcgccatagatcccaagttaccttaccttcatagacttcgacatgtttggcgttcgtgtataatgtgcaggctcaact 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7027333 tgccttatcttgttgtttgtgatcgccatagatcccaagttacctcaccttcatagactttgacatgtttggcgttcgtgtataatgtgcaggctcaact 7027432  T
Q  198 tctactggtatagttaaattgttctgcaacatataccattgaagcttcactctctggaggcgatattatctttacggatgatgttagctttgaggtcttt 297  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7027433 tctactagtatagttaaatcgttctgcaacatataccattgaagcttcactctctggaggcgatattatctttacggatgatgttagctttgaggtcttt 7027532  T
Q  298 ctggatcatttatttgtacagaggacatgatgaaatgaaaacatgactaagttgaggatactcctgcgaaatcttccggaagacatcgaagatagcacat 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7027533 ctggatcatttatttgtacagaggacatgatgaaatgaaaacatgactaagttgaggatactcctgcgaaatcttccggaagacatcgaagatagcacat 7027632  T
Q  398 gttttggctaactaatgtgcacactcaattgtatatatagatataaactaatattattgcaaggactttacttgacaaaattattgcaaagac------- 490  Q
    ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||           
T  7027633 gttttggctaactaatgtgcatactcaattg--tatatagatataaactaatattattgcaaggacttttcttgacaaaattattgcaaagacttttttt 7027730  T
Q  491 --nnnnnnnnnnngacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaagg-cggagtttcttcgatc 587  Q
                  ||||||||||||||||| ||||||||| ||||||||||||||||||||        ||||||||||||| | ||||||||||||||    
T  7027731 ttttttttttttttacgttaaagacaatttcattaatgaaaatctggcaacaaatcaaatgc--------cagaaatacaaggcctgagtttcttcgatc 7027822  T
Q  588 catatgcaatctgaattcttaagagcatatttagctaaattattgcaaagacttagtccacccaaatagtaa 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7027823 catatgcaatctgaattcttaagagcatatttagctaaattattgcaaagacttagtccacgcaaatagtaa 7027894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 521 - 627
Target Start/End: Original strand, 9492446 - 9492552
Alignment:
Q  521 ttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatattta 620  Q
    ||||||||||||| | || |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  9492446 ttaatgaaagtcttgtaataaatcaaatgccaagactactgaaatacaaggctgagtttcttcaatccatatgcaatctaaattcttaagagcatattta 9492545  T
Q  621 gctaaat 627  Q
    |||||||    
T  9492546 gctaaat 9492552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 505 - 627
Target Start/End: Complemental strand, 19237976 - 19237854
Alignment:
Q  505 gttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    ||||| ||||||||| |||| |||||| |||||| ||||||||||||||  ||||| ||||| ||| |||||||||||| || |||||||||||||||||    
T  19237976 gttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaatctgaatt 19237877  T
Q  605 cttaagagcatatttagctaaat 627  Q
    |||||||||||||| ||||||||    
T  19237876 cttaagagcatattcagctaaat 19237854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 505 - 627
Target Start/End: Complemental strand, 19311160 - 19311038
Alignment:
Q  505 gttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    ||||| ||||||||| |||| |||||| |||||| ||||||||||||||  ||||| ||||| ||| |||||||||||| || |||||||||||||||||    
T  19311160 gttaatgacaatttcattaacgaaagtttggcaataaatcaaatgccaaagctgcacaaatataagacggagtttcttcaattcatatgcaatctgaatt 19311061  T
Q  605 cttaagagcatatttagctaaat 627  Q
    |||||||||||||| ||||||||    
T  19311060 cttaagagcatattcagctaaat 19311038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 503 - 623
Target Start/End: Complemental strand, 8970506 - 8970386
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||||||| |||||||| |||| ||||||||  ||| |||||||||  |||||||  |||||||||||||||||||| | |||||| |||||||||| ||    
T  8970506 acgttaaatacaatttcattaacgaaagtctaacaataaatcaaatatcaagactatagaaatacaaggcggagtttatacgatccttatgcaatctaaa 8970407  T
Q  603 ttcttaagagcatatttagct 623  Q
    |||||||||||||||||||||    
T  8970406 ttcttaagagcatatttagct 8970386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 159 - 309
Target Start/End: Original strand, 2977308 - 2977458
Alignment:
Q  159 gacatgtttggcgttcgtgtataatgtgcaggctcaacttctactggtatagttaaattgttctgcaacatataccattgaagcttcactctctggaggc 258  Q
    |||||||||||| ||| || | | ||||||||||| | |||| || | | ||||||||  |||||||||||||| ||  |||||||||||| |||||||     
T  2977308 gacatgtttggcattcatgcacattgtgcaggctcgatttcttctagcaaagttaaatccttctgcaacatataacaccgaagcttcactccctggaggg 2977407  T
Q  259 gatattatctttacggatgatgttagctttgaggtctttctggatcattta 309  Q
    || ||||||||||||||||||||||||||||| ||||| || |||||||||    
T  2977408 gacattatctttacggatgatgttagctttgacgtcttccttgatcattta 2977458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 627
Target Start/End: Complemental strand, 14154486 - 14154365
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    |||| ||||||||| ||||  ||||| |||| | |||| |||||  || ||||||||||||||||  ||||||||||| ||||||||||||||| |||||    
T  14154486 ttaatgacaatttcattaacaaaagtgtggctataaattaaatgttaaaactgcagaaatacaagatggagtttcttcaatccatatgcaatctaaattc 14154387  T
Q  606 ttaagagcatatttagctaaat 627  Q
    ||||||| |||||| |||||||    
T  14154386 ttaagaggatattttgctaaat 14154365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 533 - 627
Target Start/End: Original strand, 38141436 - 38141530
Alignment:
Q  533 tggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    |||||| |||||||||  | |||||||||||||||||||| |||||||||| || |||||| ||||| ||||||||||| ||||||| |||||||    
T  38141436 tggcaataaatcaaatatcgagactgcagaaatacaaggcagagtttcttcaattcatatgtaatctaaattcttaagaacatattttgctaaat 38141530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 627
Target Start/End: Original strand, 25481769 - 25481856
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    |||| |||||| |||| |||||||||| ||||| |||||||||| || |||||||||||| | ||||||| |||||||||||||||||    
T  25481769 aaataaaatgctaagattgcagaaatataaggcagagtttcttcaattcatatgcaatctaatttcttaatagcatatttagctaaat 25481856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 627
Target Start/End: Original strand, 2537617 - 2537742
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctga 601  Q
    ||||||||||| || ||  |||| |||||| || ||| |||||||| |  ||||| | |||||||||||| ||||| |||||||||||||||  |||| |    
T  2537617 gacgttaaagaaaaatttattaacgaaagtatgacaataaatcaaaagttaagaccgtagaaatacaaggtggagtctcttcgatccatatgtgatctaa 2537716  T
Q  602 attcttaagagcatatttagctaaat 627  Q
    ||| | || | ||| |||||||||||    
T  2537717 attatgaaaaacatgtttagctaaat 2537742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 2977160 - 2977247
Alignment:
Q  46 tacgagatcctcatgatgatgcatatttattaatcaaagagagattttactgtgccttatcttgttgtttgtgatcgccatagatccca 134  Q
    |||||| ||||||||||||| || ||||| |||| ||||||||| ||| ||||||||   || |||||||||||||  ||| |||||||    
T  2977160 tacgagctcctcatgatgattcagatttaataatgaaagagaga-tttcctgtgcctcgcctggttgtttgtgatcagcatggatccca 2977247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 502 - 627
Target Start/End: Original strand, 32401511 - 32401636
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctga 601  Q
    ||||||||| ||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32401511 gacgttaaaaacagtttcattaacgaaagtctggcaataaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaa 32401610  T
Q  602 attcttaagagcatatttagctaaat 627  Q
    ||||||||||||||||||||||||||    
T  32401611 attcttaagagcatatttagctaaat 32401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 503 - 599
Target Start/End: Original strand, 14808517 - 14808613
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatct 599  Q
    ||||||||||||||||| |||| ||| |||||  || |||||||||| |||| |||||||||||||||||||||| |||||| | ||||||||||||    
T  14808517 acgttaaagacaatttcattaacgaatgtctgataagaaatcaaatgtcaaggctgcagaaatacaaggcggagtctcttcgtttcatatgcaatct 14808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 27214000 - 27214098
Alignment:
Q  527 aaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaa 625  Q
    ||||| || ||| |||||||||| ||||||| || ||||||||||  |||| ||||| ||||||||||||||| |||| | |||||||| |||||||||    
T  27214000 aaagtatgacaataaatcaaatgtcaagactacataaatacaaggtagagtctcttcaatccatatgcaatctaaattatgaagagcatgtttagctaa 27214098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 505 - 618
Target Start/End: Complemental strand, 2366 - 2253
Alignment:
Q  505 gttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2366 gttaaagacaatttcattaatgaaagtctggcaataaatcaaatgtcaagactacagaaatacaaggcggagtttcttcgatccatatgcaatctaaatt 2267  T
Q  605 cttaagagcatatt 618  Q
    ||||||||||||||    
T  2266 cttaagagcatatt 2253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 506 - 625
Target Start/End: Original strand, 17318528 - 17318647
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    |||||||||| ||| ||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17318528 ttaaagacaaattcattaatgaaagtctcgcaatgaatcaaaagccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaaattc 17318627  T
Q  606 ttaagagcatatttagctaa 625  Q
    ||||||||||| ||||||||    
T  17318628 ttaagagcataattagctaa 17318647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 503 - 627
Target Start/End: Original strand, 40756230 - 40756354
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    ||||||||||||| ||| ||||||||||||||   | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  40756230 acgttaaagacaaattcattaatgaaagtctgatgataaatcaaatgtcaagactgcagaaatacaaggcggagtttctttgatccatatgcaatctaaa 40756329  T
Q  603 ttcttaagagcatatttagctaaat 627  Q
    ||||||||||||||||| |||||||    
T  40756330 ttcttaagagcatattttgctaaat 40756354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 29907639 - 29907759
Alignment:
Q  507 taaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattct 606  Q
    |||| |||||||| ||||  ||||||||||||  ||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||    
T  29907639 taaaaacaatttcattaacaaaagtctggcaattaatcaaatgtcaagactacataaatacaaggcggagtttcttcaatccatatgcaatctaaattct 29907738  T
Q  607 taagagcatatttagctaaat 627  Q
    ||| |||||||||||||||||    
T  29907739 taatagcatatttagctaaat 29907759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 503 - 627
Target Start/End: Original strand, 9741792 - 9741916
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||||||||||||||||||||| |||||||||  || ||||||||| |||||| | || ||||||||||| | | |||||| ||||||||||||||| ||    
T  9741792 acgttaaagacaatttcgttaacgaaagtctgataataaatcaaataccaagaatacataaatacaaggctgcgattcttcaatccatatgcaatctaaa 9741891  T
Q  603 ttcttaagagcatatttagctaaat 627  Q
    || | |||| |||||||||||||||    
T  9741892 ttatgaagatcatatttagctaaat 9741916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 506 - 627
Target Start/End: Complemental strand, 7104213 - 7104095
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    ||||||||||||||  ||| ||||||||| ||| |||||||||| |||||||    ||||| ||| |||||||||||||| ||||||||||| | |||||    
T  7104213 ttaaagacaatttcaataacgaaagtctgacaataaatcaaatgtcaagactt---aaatataagacggagtttcttcgacccatatgcaatttaaattc 7104117  T
Q  606 ttaagagcatatttagctaaat 627  Q
    ||||||||||||||||||||||    
T  7104116 ttaagagcatatttagctaaat 7104095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 43472919 - 43473039
Alignment:
Q  507 taaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattct 606  Q
    ||||||||||||| |||||||| || |  ||| |||| ||||| |||||||||||||||| ||||  |||| |||||||||||||||||||||  ||| |    
T  43472919 taaagacaatttcattaatgaaggtttcacaataaattaaatgtcaagactgcagaaatataaggtagagtctcttcgatccatatgcaatctacatttt 43473018  T
Q  607 taagagcatatttagctaaat 627  Q
      |||||||||||||||||||    
T  43473019 gcagagcatatttagctaaat 43473039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 503 - 616
Target Start/End: Original strand, 33142990 - 33143106
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaa---gtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatct 599  Q
    |||||||| |||||||| ||||| |||   |||| ||||||||||||||||||| || ||||||||| ||| |||||| ||||| ||||||||||||| |    
T  33142990 acgttaaaaacaatttcattaataaaaaaagtctagcaacaaatcaaatgccaaaaccgcagaaatataagacggagtctcttcaatccatatgcaattt 33143089  T
Q  600 gaattcttaagagcata 616  Q
    ||||| | |||||||||    
T  33143090 gaattatgaagagcata 33143106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 527 - 627
Target Start/End: Original strand, 11422595 - 11422693
Alignment:
Q  527 aaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaa 626  Q
    ||||| |||||| ||||| |||||||||||||||||  ||||||| ||||| ||||||||||||||||||||| |||| | |||||||| ||||| ||||    
T  11422595 aaagtttggcaataaatcgaatgccaagactgcaga--tacaaggtggagtctcttcgatccatatgcaatctaaattatgaagagcatgtttagataaa 11422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 503 - 627
Target Start/End: Complemental strand, 50430152 - 50430028
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||||||| |||||||| ||||| ||||| || ||| ||||||  ||| || |||| | |||||||||||||||| ||||||| ||||||||||| ||||    
T  50430152 acgttaaaaacaatttcattaataaaagtttgacaataaatcatgtgctaaaactgtaaaaatacaaggcggagtctcttcgacccatatgcaatttgaa 50430053  T
Q  603 ttcttaagagcatatttagctaaat 627  Q
    || |  ||| |||||||||||||||    
T  50430052 ttatgtagatcatatttagctaaat 50430028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 604
Target Start/End: Original strand, 9745285 - 9745349
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||    
T  9745285 aaatcaaatgtcaagactgcataaatacaaggctgagtttcttcgatccacatgcaatctaaatt 9745349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 604
Target Start/End: Complemental strand, 44527828 - 44527727
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||||||||||  |||| ||||  ||| |||| ||| |||||| |||| ||||||||||||||| || | ||||||||||||||| ||||||||||| ||    
T  44527828 acgttaaagaccgtttcattaacaaaaatctgacaataaatcacatgctaagactgcagaaatataatgtggagtttcttcgatctatatgcaatctaaa 44527729  T
Q  603 tt 604  Q
    ||    
T  44527728 tt 44527727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 521 - 620
Target Start/End: Complemental strand, 42181603 - 42181504
Alignment:
Q  521 ttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatattta 620  Q
    |||| ||||||||  ||| |||||||| || |||||||||||||||||| | | ||| ||||| ||| ||||||||||| |||| | |||||||| ||||    
T  42181603 ttaacgaaagtctaccaataaatcaaaagcgaagactgcagaaatacaatgtgaagtctcttcaatctatatgcaatctaaattatgaagagcattttta 42181504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 626
Target Start/End: Original strand, 2576953 - 2577073
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    ||||||| |||||||||||  ||| ||||  || ||||||||   | ||| |||| |||||||||| | ||||||||| |||| || | ||||| ||||     
T  2576953 ttaaagataatttcgttaacaaaaatctgataataaatcaaacaaccagattgcataaatacaaggtgaagtttcttcaatccgtaggtaatctaaatta 2577052  T
Q  606 ttaagagcatatttagctaaa 626  Q
    ||||||||||||||| |||||    
T  2577053 ttaagagcatatttaactaaa 2577073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 592
Target Start/End: Complemental strand, 25144069 - 25143991
Alignment:
Q  514 aatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatat 592  Q
    |||||| ||||  |||||||||||| |||||||| | ||||||| | ||||||||||| || || ||||| ||||||||    
T  25144069 aatttcattaacaaaagtctggcaataaatcaaaagtcaagactacggaaatacaaggtggggtctcttcaatccatat 25143991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 502 - 627
Target Start/End: Complemental strand, 4391 - 4266
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctga 601  Q
    ||||||||||| |||||| |||| |||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |    
T  4391 gacgttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaa 4292  T
Q  602 attcttaagagcatatttagctaaat 627  Q
    |||||||| |||||||||||||||||    
T  4291 attcttaaaagcatatttagctaaat 4266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 502 - 627
Target Start/End: Original strand, 5007287 - 5007412
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctga 601  Q
    ||||||||||| |||||| |||| |||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |    
T  5007287 gacgttaaagataatttcattaacgaaagtctagaaataaatcaaatgccaagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaa 5007386  T
Q  602 attcttaagagcatatttagctaaat 627  Q
    |||||||| |||||||||||||||||    
T  5007387 attcttaaaagcatatttagctaaat 5007412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 503 - 627
Target Start/End: Complemental strand, 17539268 - 17539144
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||||||||| || ||| |||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||  |    
T  17539268 acgttaaagaaaaattcattaatgaaagtctggcaataaattaaatgcaaagactgcagaaatataaggcggagttttttcgatccatatgcaatctaca 17539169  T
Q  603 ttcttaagagcatatttagctaaat 627  Q
    ||||||||||| ||||||| |||||    
T  17539168 ttcttaagagcgtatttagttaaat 17539144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 540 - 627
Target Start/End: Complemental strand, 20559502 - 20559415
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    |||| ||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||    
T  20559502 aaattaaatgtcaagactgcagaaatataaggcggagtttcttcaacccatatgtaatctaaattcttaagagcatatttagctaaat 20559415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 627
Target Start/End: Complemental strand, 23497244 - 23497211
Alignment:
Q  594 caatctgaattcttaagagcatatttagctaaat 627  Q
    ||||||||||||||||||||||||||||||||||    
T  23497244 caatctgaattcttaagagcatatttagctaaat 23497211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 599
Target Start/End: Original strand, 5953178 - 5953269
Alignment:
Q  508 aaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatct 599  Q
    ||||| |||||| |||| |||| |||| ||| |||||||||| ||| |||||| ||||| |||| ||||| |||| |||  |||||||||||    
T  5953178 aaagataatttcattaacgaaaatctgacaataaatcaaatgtcaaaactgcataaatataaggtggagtctctttgatttatatgcaatct 5953269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 503 - 627
Target Start/End: Original strand, 29618375 - 29618499
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    ||||||||||||| ||| ||||| |||||||| ||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  29618375 acgttaaagacaaattcattaataaaagtctgacaataaatcaaaagtcaagactgcagaaatacaaggtggagtttcttcgatccatatgcaatctaaa 29618474  T
Q  603 ttcttaagagcatatttagctaaat 627  Q
    |||||||||||||||||| ||||||    
T  29618475 ttcttaagagcatatttaactaaat 29618499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 509 - 627
Target Start/End: Original strand, 35241656 - 35241774
Alignment:
Q  509 aagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattctta 608  Q
    ||||||||||| |||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  35241656 aagacaatttcattaacgaaagtctggcaataaatcaaatgtcaagactgtagaaatacaaggcggagtttcttcgacctatatgcaatctaaattctta 35241755  T
Q  609 agagcatatttagctaaat 627  Q
    ||| |||||||||||||||    
T  35241756 agaacatatttagctaaat 35241774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 512 - 597
Target Start/End: Complemental strand, 1377857 - 1377772
Alignment:
Q  512 acaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaat 597  Q
    |||||||| ||||||||||||| |||| |||| ||||| |||||| | ||||||| |||| ||| |||||||||||||||||||||    
T  1377857 acaatttcattaatgaaagtctagcaataaattaaatgtcaagaccgtagaaatataaggtggaatttcttcgatccatatgcaat 1377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 512 - 597
Target Start/End: Complemental strand, 1385605 - 1385520
Alignment:
Q  512 acaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaat 597  Q
    |||||||| ||||||||||||| |||| |||| ||||| |||||| | ||||||| |||| ||| |||||||||||||||||||||    
T  1385605 acaatttcattaatgaaagtctagcaataaattaaatgtcaagaccgtagaaatataaggtggaatttcttcgatccatatgcaat 1385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 522 - 627
Target Start/End: Original strand, 18746173 - 18746277
Alignment:
Q  522 taatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttag 621  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||     
T  18746173 taatgaaagtcgggcaataaatcaaatgc-aagactgcagaaatacaaggcggagtttcttcgatccatatgtaatctgaattcttaagaacatatttac 18746271  T
Q  622 ctaaat 627  Q
    ||||||    
T  18746272 ctaaat 18746277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 521 - 627
Target Start/End: Complemental strand, 43544106 - 43544000
Alignment:
Q  521 ttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatattta 620  Q
    ||||| ||||| || ||| |||| ||| ||||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  43544106 ttaataaaagtatgacaataaattaaaagccaagattgcataaatatatggcggagtttcttcgatccatatgcaatctaaattcttaagagcaaattta 43544007  T
Q  621 gctaaat 627  Q
    |||||||    
T  43544006 gctaaat 43544000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 504 - 627
Target Start/End: Original strand, 2740030 - 2740153
Alignment:
Q  504 cgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaat 603  Q
    |||||||||||||||| ||||| |||||||  ||| |||| |||||  |||||| || |||||||| || || ||| ||| ||  |||||||||||||||    
T  2740030 cgttaaagacaatttcattaataaaagtctaacaataaattaaatgttaagactacaaaaatacaaagcagaattttttcaatgtatatgcaatctgaat 2740129  T
Q  604 tcttaagagcatatttagctaaat 627  Q
    | | ||||||||||||| ||||||    
T  2740130 tataaagagcatatttaactaaat 2740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 505 - 627
Target Start/End: Original strand, 11790380 - 11790502
Alignment:
Q  505 gttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    ||||||||||||||| |||  ||||||||| ||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||  |||    
T  11790380 gttaaagacaatttcattatcgaaagtctgacaataaatcaaatgtcaagactacataaatacaaggcagagtttcttcgatccatatgcaatctagatt 11790479  T
Q  605 cttaagagcatatttagctaaat 627  Q
    ||||||| |||||||||||||||    
T  11790480 cttaagatcatatttagctaaat 11790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 627
Target Start/End: Original strand, 25616224 - 25616325
Alignment:
Q  526 gaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaa 625  Q
    |||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||| ||||||||| |||||    
T  25616224 gaaagtttggcaataaatcaaatgtcaagactgcagaaatataaggcggagtttcttcaatccgtatgcaatctaaattcttaaaagcatattttgctaa 25616323  T
Q  626 at 627  Q
    ||    
T  25616324 at 25616325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 586
Target Start/End: Original strand, 14069053 - 14069137
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgat 586  Q
    |||| |||||| || ||| |||| |||||||||||||||||||||| | |||||||||  |||||||||||||||||||||||||    
T  14069053 gacgataaagataaattcattaacgaaagtctggcaacaaatcaaaagtcaagactgcgaaaatacaaggcggagtttcttcgat 14069137  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 502 - 586
Target Start/End: Original strand, 14379081 - 14379165
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgat 586  Q
    |||| |||||| || ||| |||| |||||||||||||||||||||| | |||||||||  |||||||||||||||||||||||||    
T  14379081 gacgataaagataaattcattaacgaaagtctggcaacaaatcaaaagtcaagactgcgaaaatacaaggcggagtttcttcgat 14379165  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 506 - 627
Target Start/End: Complemental strand, 21416921 - 21416800
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    ||||||| |||||  ||||  |||||||| ||| |||||||||| ||||||||||||||||||||| | ||| | || |||||| ||||||||| ||||     
T  21416921 ttaaagataattttattaacaaaagtctgacaataaatcaaatgtcaagactgcagaaatacaaggtgaagtctttttgatccagatgcaatctaaatta 21416822  T
Q  606 ttaagagcatatttagctaaat 627  Q
    | |||||||| |||| ||||||    
T  21416821 tgaagagcatgtttatctaaat 21416800  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 604
Target Start/End: Complemental strand, 31001818 - 31001741
Alignment:
Q  527 aaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    |||||||| ||| |||| ||||| ||||||||| ||||||||| | ||| | |||||||| |||||||||||| ||||    
T  31001818 aaagtctgacaataaattaaatgtcaagactgcggaaatacaacgtggaatctcttcgattcatatgcaatctaaatt 31001741  T

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Target: scaffold0129 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 528 - 627
Target Start/End: Original strand, 44499 - 44598
Alignment:
Q  528 aagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    ||||||||||| ||||||| |  || ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44499 aagtctggcaataaatcaattttcaggactgcagaaatacaagacgaagtttcttcgatccatatgcaatctaaattcttaagagcatatttagctaaat 44598  T

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Target: scaffold0785 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 540 - 627
Target Start/End: Complemental strand, 575 - 488
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||| ||||||||| |||||||||||||||||    
T  575 aaatcaaatgccaagactgcagaaatataaggcagagtttcttcaattcatatgcaatctaaattcttaatagcatatttagctaaat 488  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 503 - 621
Target Start/End: Original strand, 1661220 - 1661338
Alignment:
Q  503 acgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaa 602  Q
    |||| |||||||||||| ||||| |||||||||||| |||  ||||| ||||||| || |||||||||||||||| |||| ||||||| |||||||||||    
T  1661220 acgtcaaagacaatttcattaataaaagtctggcaataaaataaatgacaagactacataaatacaaggcggagtctctttgatccatttgcaatctgaa 1661319  T
Q  603 ttcttaagagcatatttag 621  Q
    || | ||||||||||||||    
T  1661320 ttatgaagagcatatttag 1661338  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 502 - 620
Target Start/End: Original strand, 55455650 - 55455768
Alignment:
Q  502 gacgttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctga 601  Q
    |||||||||||||||||   ||| ||||||| ||||| |||||||| | |||||||  ||||||| |||| ||| ||||||||| | ||||||||| | |    
T  55455650 gacgttaaagacaattttaataacgaaagtccggcaataaatcaaacgtcaagactatagaaatataaggtggaatttcttcgacctatatgcaatataa 55455749  T
Q  602 attcttaagagcatattta 620  Q
    |||||||||||||||||||    
T  55455750 attcttaagagcatattta 55455768  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 506 - 627
Target Start/End: Original strand, 19624673 - 19624794
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattc 605  Q
    |||||||||| ||| ||||  ||||  || ||| ||||||||||| ||||||| |||||||||||| | | | ||||||||||||||||||||| ||||     
T  19624673 ttaaagacaaattcattaacaaaagcttgacaataaatcaaatgctaagactgtagaaatacaaggtgaaatctcttcgatccatatgcaatctaaatta 19624772  T
Q  606 ttaagagcatatttagctaaat 627  Q
    | ||||||||| ||||||||||    
T  19624773 taaagagcatacttagctaaat 19624794  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 598
Target Start/End: Original strand, 9490708 - 9490798
Alignment:
Q  508 aaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatc 598  Q
    |||||||| ||| |||| |||||| || ||| |||| ||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  9490708 aaagacaaattcattaacgaaagtttgacaataaataaaatgtcaagactgcagaaatacaaggcgaagtttctttgatctatatgcaatc 9490798  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 627
Target Start/End: Complemental strand, 31497220 - 31497133
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaagagcatatttagctaaat 627  Q
    ||||||||||| ||||||||||||| |||||| | ||  ||||||||| ||||||||||| |||| | |||||||| |||||||||||    
T  31497220 aaatcaaatgcgaagactgcagaaacacaaggtgtagactcttcgatctatatgcaatctaaattatgaagagcatgtttagctaaat 31497133  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 627
Target Start/End: Complemental strand, 46513497 - 46513376
Alignment:
Q  506 ttaaagacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttctt-cgatccatatgcaatctgaatt 604  Q
    |||||||||||||  ||||| |||||||  ||  |||||||||| ||||||||||||||||||| ||  ||| |||| ||||| ||||||||||||||||    
T  46513497 ttaaagacaattttattaataaaagtcta-cactaaatcaaatgtcaagactgcagaaatacaaagcaaagtctctttcgatctatatgcaatctgaatt 46513399  T
Q  605 cttaagagcatatttagctaaat 627  Q
     | |||| | |||||||||||||    
T  46513398 atgaagaacgtatttagctaaat 46513376  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 592
Target Start/End: Original strand, 3362776 - 3362832
Alignment:
Q  536 caacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatat 592  Q
    |||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||    
T  3362776 caacaaatcaaaagccaagactgcggaaatacaaggtggggtctcttcaatccatat 3362832  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 9606652 - 9606588
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    |||||||||| ||||| || |||||||| ||| ||||| |||| |||||||||||||||| ||||    
T  9606652 aaatcaaatgtcaagattgtagaaatacgaggtggagtctctttgatccatatgcaatctaaatt 9606588  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 9601007 - 9600943
Alignment:
Q  540 aaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaatt 604  Q
    |||||||||| |||||||| |||||||  ||| ||||| |||| |||||||||||| ||| ||||    
T  9601007 aaatcaaatgtcaagactgtagaaatatgaggtggagtctctttgatccatatgcagtctaaatt 9600943  T

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Target: scaffold0524 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 511 - 619
Target Start/End: Original strand, 9648 - 9756
Alignment:
Q  511 gacaatttcgttaatgaaagtctggcaacaaatcaaatgccaagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctgaattcttaag 610  Q
    ||||||||| |||| |||| |||| | | ||||||||||||||||||||| |||||||||||  ||||||||| ||| | ||||||||| |||||||| |    
T  9648 gacaatttcattaacgaaactctgacgataaatcaaatgccaagactgcataaatacaaggcaaagtttcttcaatctacatgcaatctaaattcttatg 9747  T
Q  611 agcatattt 619  Q
    | |||||||    
T  9748 atcatattt 9756  T

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