View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_12 (Length: 477)
Name: NF12513_low_12
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 18264955 - 18264509
Alignment:
| Q |
16 |
aaagggtacgtagaaatcagcttctgaaaaacaccttatgttctgtttatttcgctgagagagatcaatacgtatctcatgcaacaaacgccataaacga |
115 |
Q |
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| T |
18264955 |
aaagggcacgtagaaatcagcttcggaaaaacaccttatgttctgtttatttcgctgagagagatcaatacgtatctcatgcaacaaacgccataaacga |
18264856 |
T |
|
| Q |
116 |
gttggttttttcggaggcacgccatgaggtgaaccatagaatacaactggagatatctgcttccgattactacaacttttggttttagctattgctgatt |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18264855 |
gttggttttttcggaggtacgccatgaggtgaaccatagaatacaactggagatatctgcttccgattactacaacttttggttttagctattgctgatt |
18264756 |
T |
|
| Q |
216 |
taagctgaaatggaatgaagtttagttttgacacacataaagtatgaacctagtagcagtgataatggtacaagaggatgcattatataacaaatatatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18264755 |
taagctgaaatggaatgaagtttagttttgacacgcataaagtatgaacctagtagcagtgataatggtacaagaggatgcattatataacaaatatatg |
18264656 |
T |
|
| Q |
316 |
taaagaaacaaatagcaataaccaattttctttttgaaataaaaataagcacttaaacaagatgtcactagaaacaacgcatacaattcttctcacagca |
415 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18264655 |
taaagaaacaaatagtaataaccaattttctttttgaaataaaaataagcaattaaacaagatgtcactagaaacaacgcatacaattcttctcacagca |
18264556 |
T |
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| Q |
416 |
tttgaagagtagtagttaggtataaaccaactatttgacaaaaaagt |
462 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18264555 |
tttgaagagtagtagttaggtataaagcaactatttgacaaaaaagt |
18264509 |
T |
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