View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_13 (Length: 445)
Name: NF12513_low_13
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 38 - 428
Target Start/End: Complemental strand, 5376140 - 5375746
Alignment:
| Q |
38 |
gtaaactaaaagacatgggattcatcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaa |
137 |
Q |
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| T |
5376140 |
gtaaactagaagacatgggattactcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaa |
5376041 |
T |
|
| Q |
138 |
cgtaaagaatgcatgcttgagcatactcagtattgtaa----acaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcgg |
233 |
Q |
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| T |
5376040 |
cgcaaagaatgcatgcttgagcatactcagtattgtaattaaacaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcgg |
5375941 |
T |
|
| Q |
234 |
atacaaacgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgttaaagggaaacaacaaattactccaagt |
333 |
Q |
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| T |
5375940 |
atacaaatgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgttaaagggaaacaacaaattactccaagt |
5375841 |
T |
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| Q |
334 |
acaaccagtcaaacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatatatgatgaatacactgtcagtgcc |
428 |
Q |
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| T |
5375840 |
acaatcagtcaaacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatatatgatgaatacactgtcagtgcc |
5375746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 49 - 366
Target Start/End: Original strand, 5368505 - 5368810
Alignment:
| Q |
49 |
gacatgggattcatcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatg |
148 |
Q |
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| T |
5368505 |
gacatgggattactcaagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatg |
5368604 |
T |
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| Q |
149 |
catgcttgagcatactcagtattgtaaacaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtg--ggttcgg---atacaaacgc |
243 |
Q |
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||| ||||| |||||||||||||||||||| |||| ||| ||| |||| |||||||||| || ||||| | ||| |||| | |
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| T |
5368605 |
cat---------------atattgaaaacaaagtgattgatatcgcgtcctgaatgtg--atgacatatgagcatatgcaggttcagcatataaaaacac |
5368687 |
T |
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| Q |
244 |
aaatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgttaaagggaaacaacaaattactccaagtacaaccagtc |
343 |
Q |
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| T |
5368688 |
aaattacatgcatttatataatcatctagagtatattgaaaagaaaaattgagtatcctcgtcaaagggaaatggcaaattactcatagtaacaccagtc |
5368787 |
T |
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| Q |
344 |
aaacggtgtgaatgaggtataca |
366 |
Q |
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||| ||||||||||||||||||| |
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| T |
5368788 |
aaatggtgtgaatgaggtataca |
5368810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5376504 - 5376458
Alignment:
| Q |
1 |
aaatacaagtgagtgagcagtctcatgtcgactaagagtaaactaaa |
47 |
Q |
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| T |
5376504 |
aaatacaagtgagtgaacagtctcatgtcgactaagaataaactaaa |
5376458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 5403643 - 5403591
Alignment:
| Q |
64 |
gagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatt |
116 |
Q |
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|||||| |||||||||||||||| | || |||||||||| ||||||||||||| |
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| T |
5403643 |
gagtcactttcttgtctaagaacgaaaacattagttattcgtcctgcaacatt |
5403591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 12766398 - 12766353
Alignment:
| Q |
66 |
gtcattttcttgtctaagaacaagaatattagttattggtcctgca |
111 |
Q |
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|||| |||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
12766398 |
gtcaatttcttgtctaacaacaataatattagttataggtcctgca |
12766353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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