View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_15 (Length: 373)
Name: NF12513_low_15
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 26219559 - 26219190
Alignment:
| Q |
1 |
tgaaaatatgaagatcagttagagatttgaccatcttagccaacctgtgggcaacctcagttgcttgtcttctagtaaattcaacacactaatttgtaaa |
100 |
Q |
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| T |
26219559 |
tgaaaatatgaagatcagttagagatgtgaccatcttagccaacgtgtgggcaacctcagttgcttgtcttctagtaaattcaacacaataatttgtaaa |
26219460 |
T |
|
| Q |
101 |
aatcgaaccatcaattctacgacaatcctgattcctgaaaaataacaccaaaatccgagttgtcttctcctctaataagaaatttggataccacattcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
26219459 |
aatcgaaccatcaattctacgacaatcctgattcctgaaaaataacaccaaaatccgagttctcttctcctctagtaagaaatttggataccacattcag |
26219360 |
T |
|
| Q |
201 |
agaatcaagttcaaaatctacattggtaagatataaatctcgaacccattggatagaagtcaataaaggtgagaagcattccattttagaaagcataaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26219359 |
agaatcaagttcaaaatctacattggtaagatataaatctcgaacccattggatagaagtcaataaaggtgagaagcaatccattttagaaagcataaag |
26219260 |
T |
|
| Q |
301 |
ctttcgtttcatctcttatgca--tatacctattctaactatgttttgagtagtggagaaggatacatat |
368 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26219259 |
ctttcgtttcatctcttatgcatatatacctattctaactatgttttgagtagtggagaaggatacatat |
26219190 |
T |
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