View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_16 (Length: 350)
Name: NF12513_low_16
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 9299306 - 9299082
Alignment:
| Q |
15 |
attctcctaattgcacggaatgcaatttatacgcatttaaaatacgtacaaaaatcaaatgacgttgtattcaaaatttcaatgtcaaaaagataattta |
114 |
Q |
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| T |
9299306 |
attctcctaattgcacagaatgcaatttatatgcaattaaaatacgtacaaaaatcaaatgacgttgtattcgaaatttcaatgtcaaaaagataattta |
9299207 |
T |
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| Q |
115 |
tttgcaattaagattaagagtnnnnnnnggggttggattgggttagaattgggtgcatggggtcgtggtcatttctggaagtgaggaacccagctggtag |
214 |
Q |
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| T |
9299206 |
tttgcaattaagattaagagt-aaaaaaggggttggattgggttagaattgggtgcatggggtcgtggtcatttctggaagtgaggaacccagctggtag |
9299108 |
T |
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| Q |
215 |
ggtctactcacacactctgccccaat |
240 |
Q |
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| T |
9299107 |
ggtctactcacacactctgccccaat |
9299082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 9299031 - 9298972
Alignment:
| Q |
291 |
actcttcttataacccccttctctcatatctcattctcattcaccaccaccactcatttc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9299031 |
actcttcttataacccccttctctcatatctcattctcattcaccaccaccactcatttc |
9298972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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