View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_19 (Length: 330)
Name: NF12513_low_19
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_19 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 8432123 - 8432419
Alignment:
| Q |
17 |
cagaataaggtgatataaaaatagtgatctttatagctctgaacttcaaccaaagatcaacgataaaaataaatgaggaagaagcaattataaaccattt |
116 |
Q |
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| T |
8432123 |
cagaacaaggtgatataaaaatagtgatctttatagctctgaacttcaaccaaagatcaacgataaaaatagatgaggaagaagcaattataaaccattt |
8432222 |
T |
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| Q |
117 |
tcggtaaactgtagttaagcatagtttgcttgttttgtcttttggccaatgctatcaatagcggatagcacaaaaaagcagaatgttaaaaatctcctat |
216 |
Q |
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| T |
8432223 |
tcggtaaactatagttaagcatagtttgcttgttttgtcatttggccaatgctatcaatagcggatagcacaaaaaagcagaatgttaaaaatctcctat |
8432322 |
T |
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| Q |
217 |
gcaacagtgctacagcgccactgttgtggctactctgaacattttgtaataactagcatatcgcgaagaacaataccagtttgtccacattccgcta |
313 |
Q |
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| T |
8432323 |
gcaacagtgctacagcgccactgttgtggctactctgaacattttgtaataactagcatatcgcgaagaacaataccagtttgtccacattccgcta |
8432419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 8430902 - 8431054
Alignment:
| Q |
98 |
aagcaattataaaccattttcggtaaactgtagttaagcatagtttgcttgttttgtcttttggccaatgctatcaatagcggatagcacaaaaaagcag |
197 |
Q |
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| T |
8430902 |
aagcaattagaaaccattgttggtaacctgtagttaaacacagttagcttgttttgtcatttgatcaatgttgtcaatagcggatagca----------g |
8430991 |
T |
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| Q |
198 |
aatgttaaaaatctcctatgcaacagtgctacagcgccactgttgtggctactctgaacattt |
260 |
Q |
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| T |
8430992 |
aatgttaaaattctcctatgcaacagttctatagcgccactgtagcggttactctgaacattt |
8431054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 47881573 - 47881516
Alignment:
| Q |
163 |
caatgctatcaatagcggatagcacaaaaaagcagaatgttaaaaatctcctatgcaa |
220 |
Q |
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| T |
47881573 |
caatgctgtcaatagcggatagcagaaaaaagcggattgttaaaattcctctatgcaa |
47881516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 32458943 - 32458977
Alignment:
| Q |
25 |
ggtgatataaaaatagtgatctttatagctctgaa |
59 |
Q |
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| T |
32458943 |
ggtgatataaaaatagtgatctttatagctctgaa |
32458977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 6631 - 6546
Alignment:
| Q |
98 |
aagcaattataaaccattttcggtaaactgtagttaagcatagtttgcttgttttgtcttttggccaatgctatcaatagcggatagca |
186 |
Q |
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| T |
6631 |
aagcaattagaaaccattgttgataacctgtagttaac---agttagcttgttttgtcatttgaccaatgttgtcaatagcggatagca |
6546 |
T |
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