View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_20 (Length: 326)
Name: NF12513_low_20
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 24818609 - 24818311
Alignment:
| Q |
18 |
atatcctcagtaaaagaagcatacgataggattaaatcattggtccatagaactccagttctctcttccacctctctagatgacatatctggaagaaaac |
117 |
Q |
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| T |
24818609 |
atatcctcagtaaaagaagcatacgataggattaaatcattggtccatagaactccagttctctcctccacctctctagatgacatatctggaagaaaac |
24818510 |
T |
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| Q |
118 |
tatattttaagtgtgaaaatttccaaaaaaggtgagtgataataacattttgatgaacataaataaatactatatctaactcgtacacttttaagaaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24818509 |
tatattttaagtgtgaaaatttccaaaaaaggtgagtgataataactttttgatgaacataaataaatactatatctaactcgtacacttttaagaaaag |
24818410 |
T |
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| Q |
218 |
aataaagaagaaaataatatataatatttccttttgtattctattgccattagcggagcttttaaatttaggggcgcatgcaacgctgttctctctctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24818409 |
aataaagaagaaaataatatataatatttccttttgtattctatgaccattagcggagcttttaaatttaggggtgcatgcaacgctgttctctctctg |
24818311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 41875065 - 41875188
Alignment:
| Q |
30 |
aaagaagcatacgataggattaaatcattggtccatagaactccagttctctcttccacctctctagatgacatatctggaagaaaactatattttaagt |
129 |
Q |
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||||||||| | | ||| |||||||||||| ||| | ||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| |
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| T |
41875065 |
aaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgacatatcaagaagaaaactatattttaagt |
41875164 |
T |
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| Q |
130 |
gtgaaaatttccaaaaaaggtgag |
153 |
Q |
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| T |
41875165 |
gtgaaaattttcaaaagaggtgag |
41875188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 41875285 - 41875386
Alignment:
| Q |
213 |
aaaagaataaagaagaaaataatatataatatttccttttgtattctattgccattagcggagcttttaaatttaggggcgcatgcaacgctgttctctc |
312 |
Q |
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|||| ||||||||||||| | |||||||||||| ||| |||||||||| | | |||||||||||||||||||||| || || ||||| |||||| |||| |
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| T |
41875285 |
aaaataataaagaagaaatgactatataatattttcttctgtattctat-gtcgttagcggagcttttaaatttagaggtgcctgcaatgctgttttctc |
41875383 |
T |
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| Q |
313 |
tct |
315 |
Q |
| |
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||| |
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| T |
41875384 |
tct |
41875386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 40868905 - 40868845
Alignment:
| Q |
255 |
attctattgccattagcggagcttttaaatttaggggcgcatgcaacgctgttctctctct |
315 |
Q |
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||||||| ||||| || ||||||||||||||||| || |||||||| |||||| ||||||| |
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| T |
40868905 |
attctatggccatcagtggagcttttaaatttagaggtgcatgcaatgctgttttctctct |
40868845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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