View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_21 (Length: 321)
Name: NF12513_low_21
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 40235076 - 40235417
Alignment:
| Q |
1 |
caaagcacaaaatcgaagtagagtatataaagaactaaaccaattcgttgggtctgtagtgttttgcacagaagtatggatttcccggctgaatatacat |
100 |
Q |
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| T |
40235076 |
caaagcacaaaatcgaagtagagtatataaagaactaaaccaattcgttgggtctgtagtgttttgcatagaagtaaggatttcctggctgaatatacat |
40235175 |
T |
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| Q |
101 |
tt------------catcatcttcatgttttggagctgcagagctgcttccaatgctccctaaaccacagtcaatcattaggtaaatgtcgactctcaaa |
188 |
Q |
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| T |
40235176 |
ttcaacatcaatttcatcatcttcatgttttggagctgcagagctgcttccaatgctccctaaaccacagtcaatcattaggtaaatgttgactctcgaa |
40235275 |
T |
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| Q |
189 |
taaatatacaactgaaaaaacaaaatagtattttcttcttcttattcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgt---tgt |
285 |
Q |
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| T |
40235276 |
taaatatacaactgaaaaaacaaaatagtattttcttcttattattcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgttgatgt |
40235375 |
T |
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| Q |
286 |
tcacag------ctgattcccttgtcaactccttgattcttt |
321 |
Q |
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| T |
40235376 |
tcacagcttctactgattcccttgtcaactcctttattcttt |
40235417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 17461458 - 17461351
Alignment:
| Q |
60 |
tgttttgcacagaagtatggatttcccggctgaatatacatttca------------tcatcttcatgttttggagctgcagagctgcttccaatgctcc |
147 |
Q |
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| T |
17461458 |
tgttttgcatagaagtatggatttcctggctgaatatacatttcagcatcaatttcatcatcttcaagatttggagctgcagagctacttccaatgctcc |
17461359 |
T |
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| Q |
148 |
ctaaacca |
155 |
Q |
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| T |
17461358 |
ctaaacca |
17461351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 17455051 - 17455002
Alignment:
| Q |
234 |
tcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgttg |
284 |
Q |
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| T |
17455051 |
tcttcggtatgatgtcaaaa-cttacatgctttgcaggttctacaatgttg |
17455002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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