View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_22 (Length: 313)
Name: NF12513_low_22
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 42848348 - 42848129
Alignment:
| Q |
25 |
gcaggtggaacacccgtagacagagagtaatctaattaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctca |
124 |
Q |
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| T |
42848348 |
gcaggtggaacacccgtagacagagagtaatctaatt----gacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctca |
42848253 |
T |
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| Q |
125 |
taagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcctcaagtcacaaataccactgcaataaacactacattttttacaatatga |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42848252 |
taagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcctcaagtcacaaataccactgcaataaacactacattttttacaatctga |
42848153 |
T |
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| Q |
225 |
ataaaaaatttaaactgaataaat |
248 |
Q |
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|||||||||||||||||||||||| |
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| T |
42848152 |
ataaaaaatttaaactgaataaat |
42848129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 42854904 - 42854642
Alignment:
| Q |
25 |
gcaggtggaacacccgtagacagagagtaatctaattaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctca |
124 |
Q |
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|||||| ||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42854904 |
gcaggtcgaacatccattgacagagagtaatctaatt----gacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctca |
42854809 |
T |
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| Q |
125 |
taagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcct-------------caagtcacaaataccactgcaataaacactacatt |
211 |
Q |
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| T |
42854808 |
caagttctaagttaagcaatatctatatagcggaagatgcagaaacggacctcaatgttgtcaagcaagtcacaaataccactgcaatgaacactacatt |
42854709 |
T |
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| Q |
212 |
ttttacaatatgaataaaaaatttaaactgaataaatggttatatattagcctacgtattcaggtaa |
278 |
Q |
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| T |
42854708 |
ttttacaatctgaataaaaaatttaaaccgaataaatggttatatcttagcctacatattcaagtaa |
42854642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 42856497 - 42856395
Alignment:
| Q |
77 |
atatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcct |
176 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
42856497 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42856398 |
T |
|
| Q |
177 |
caa |
179 |
Q |
| |
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||| |
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| T |
42856397 |
caa |
42856395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 42860564 - 42860462
Alignment:
| Q |
77 |
atatatactgcagtgatcctaatcaataactttgatagaatggcctcataagttctaagttaagcaataactatatagcggaagacaaagaaatgtgcct |
176 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
42860564 |
atatatactgcagtgatcctaatcaataactttgacagaatggccttgcaagttcaaagttaagcaataactatatagctgaagacaaagaaatgtgtct |
42860465 |
T |
|
| Q |
177 |
caa |
179 |
Q |
| |
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||| |
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| T |
42860464 |
caa |
42860462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 42853009 - 42852859
Alignment:
| Q |
29 |
gtggaacacccgtagacagagagtaatctaattaattgacttaaggacatatatactgcagtgatcctaatcaataactttgatagaatggcctcataag |
128 |
Q |
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||||||||| | |||||||||| ||||||||| | | | || | ||||||| ||||| ||| |||| |||||||||||||||||||||||| | ||| |
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| T |
42853009 |
gtggaacacacatagacagagattaatctaatcgacttaattcatgacatatgtactgtagtaatccaaatcaataactttgatagaatggcttgccaag |
42852910 |
T |
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| Q |
129 |
ttctaagttaagcaataactatatagcggaagacaaagaaatgtgcctcaa |
179 |
Q |
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||| ||| ||||||||||||||| ||| | ||| ||||||||||| ||||| |
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| T |
42852909 |
ttcaaagataagcaataactatacagcagcagaaaaagaaatgtgtctcaa |
42852859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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