View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_3 (Length: 664)
Name: NF12513_low_3
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 54932 - 54285
Alignment:
| Q |
19 |
agttagcaagtaacttgggtttgtggtttccnnnnnnnnnnnnaacattgtttatatcttgcttgctctacgtatcataatagctgttattgaaaattgt |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54932 |
agttagcaagtaacttgggtttgtggtttcctttttgttttttaacattgtttatatcttgcttgctctacgtatcataatagctgttattgaaaattgt |
54833 |
T |
|
| Q |
119 |
tggatttattggaattgccttccnnnnnnnnn-------------catgttccttagttaagatttttcacagtatgtattgtacattctgaatgtagaa |
205 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54832 |
tggatttattggaattgccttcctttttttttttttttttttcttcatgttccttagttaagatttttcacagtatgtattgtacattctgaatgtagaa |
54733 |
T |
|
| Q |
206 |
agttaaattccatttcagaacagtaaaagaaaacatcaacagcagctgaggtcctcaaatcttggcatcaaaagaagatatggttgctcaataggaccct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54732 |
agttaaattccatttcagaacagtaaaagaaaacatcaacagcagctgaggtcctcaaatcttggcatcaaaagaagatatggttgctcaataggaccct |
54633 |
T |
|
| Q |
306 |
caatttcgcttcctatcgggttgtaactccatatctgctttttacagcaagacgaacacttttaaggggtctattgagcaaccatcgaagaagaatgtat |
405 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632 |
caatttcgcttcctatcgggctgtaactccatatctgctttttacagcaagacgaacacttttaaggggtctattgagcaaccatcgaagaagaatgtat |
54533 |
T |
|
| Q |
406 |
tctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaacaactagtagtttggatgaaatttaagttatc |
505 |
Q |
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| T |
54532 |
tctgttttgggacttagtgtgttgtcttggtttatatgtcacaacccatcaattataatagggttgaacaactagtagtttggatgaaatttaagttatc |
54433 |
T |
|
| Q |
506 |
tttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatgga--tataagtgtttggaaaagtcatcaaatttgtgccgtctggatgtg |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54432 |
tttagggcgctgtttttcctcagcccttaatatcaatcaacatcagttatggatatataagtgtttggaaaagtcatcaaatttgtgccgtctggatatg |
54333 |
T |
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| Q |
604 |
tgctttttgacaatttgtacagtccggatgcattatttttagcagtga |
651 |
Q |
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| T |
54332 |
tgctttttgacaatttgtacagtccggatgcattatttttagcagtga |
54285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 448 - 563
Target Start/End: Complemental strand, 33754197 - 33754087
Alignment:
| Q |
448 |
aacccatcaattataatagggttgaacaactagtagtttggatgaaatttaagttatctttagggcgctgtttttcctcagcccttaatatcaatcaaca |
547 |
Q |
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|||||||||| ||||||||||||| || ||||||| | ||||||||||| |||||||||||||||| ||| ||||||| ||||||||| ||||||| |
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| T |
33754197 |
aacccatcaactataatagggttggacgactagtactctggatgaaattcaagttatctttagggcactg-ttttccttagcccttaa----catcaaca |
33754103 |
T |
|
| Q |
548 |
tcagttatggatataa |
563 |
Q |
| |
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||||||| |||||||| |
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| T |
33754102 |
tcagttacggatataa |
33754087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 560 - 636
Target Start/End: Complemental strand, 33753944 - 33753868
Alignment:
| Q |
560 |
ataagtgtttggaaaagtcatcaaatttgtgccgtctggatgtgtgctttttgacaatttgtacagtccggatgcat |
636 |
Q |
| |
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||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
33753944 |
ataagtgtttgcaaaattcatcaaatttgtgttgtctggatttgtgctttttgacaatttgtacggtctggatgcat |
33753868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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