View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_30 (Length: 246)
Name: NF12513_low_30
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 23876974 - 23876770
Alignment:
| Q |
22 |
caaaacaacatgagtaagcccaatgtgaagcaatgagttgtggaaaactaggccactatatccacacttttgaaaacattatcttcaaaacaaaaataat |
121 |
Q |
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| T |
23876974 |
caaaacaacatgtgtaagtccaatgtgaagcaatgagttgtggaaaactaggccactatatccacacttttgaaaacaatatcttc-aaataaaaataat |
23876876 |
T |
|
| Q |
122 |
attattcatagaaaaaaggagtaaaagtataattcagaaacatgaaatatctacaacaaaggaataattcaaaaagcatatagattatgttcagtaacct |
221 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||| || |
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| T |
23876875 |
attattccaagaaaaaaggagtaaaagtataattcagaaacatgaaatatctacaacaatggaataactc----agcatatacattatgttcagtaatct |
23876780 |
T |
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| Q |
222 |
atgaaacaca |
231 |
Q |
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|||||||||| |
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| T |
23876779 |
atgaaacaca |
23876770 |
T |
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