View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_31 (Length: 237)
Name: NF12513_low_31
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_31 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 26146503 - 26146717
Alignment:
| Q |
19 |
tatttcctcactgcagatccaacaaataactcccaaacctcattttacaacctcaacaaccaagcccggacctttccttcatttcccacacagtttccac |
118 |
Q |
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| T |
26146503 |
tatttcctcactgcagatccaacaaataactcccaaacctcattttacaacctcaacaaccaagcccagacctttccttcatttcccacacagtttccac |
26146602 |
T |
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| Q |
119 |
cccattttggaccccaaaacttgagctaccaccattcattcaacggtacatacccttttgaatggctcttttaagccgaacaattttttaccttctacca |
218 |
Q |
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| T |
26146603 |
cccattttggaccccaaaacttgagctagaac----cattcgacggtacatacccttttgaatggctcttttaagccgaacaattttttaccttctacca |
26146698 |
T |
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| Q |
219 |
aataccacctgaaagtcgc |
237 |
Q |
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| T |
26146699 |
aataccacctgaaagtcgc |
26146717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 16237691 - 16237904
Alignment:
| Q |
19 |
tatttcctcactgcagatccaacaaataactcccaaacctcattttacaacctcaacaaccaagcccggacctttccttcatttcccacacagtttccac |
118 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| | |||||||| ||| |
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| T |
16237691 |
tatttcctcactgcagatc-aacaaatcactcccaaacctcattttaaaacctcaacaaccaagcgcggacctttctttcatttcacccacagttttcac |
16237789 |
T |
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| Q |
119 |
cccattttggaccccaaaacttgagctaccaccattcattcaacggtacatacccttttgaatggctcttttaagccgaacaattttttaccttctacca |
218 |
Q |
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||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||| || |
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| T |
16237790 |
cccattttgaaccccaaaacttgagctagcaccatttg----acggtaaatacccttttgcatggctcttttaagtcgaactattttttatcttctagca |
16237885 |
T |
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| Q |
219 |
aataccacctgaaagtcgc |
237 |
Q |
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| T |
16237886 |
aataccacctgaaagtcgc |
16237904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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