View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12513_low_33 (Length: 226)

Name: NF12513_low_33
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12513_low_33
NF12513_low_33
[»] chr3 (7 HSPs)
chr3 (14-207)||(54545870-54546063)
chr3 (14-171)||(5818651-5818806)
chr3 (14-171)||(5823413-5823568)
chr3 (15-98)||(2817401-2817486)
chr3 (29-169)||(24671173-24671301)
chr3 (118-169)||(4579126-4579177)
chr3 (14-71)||(35977103-35977160)
[»] chr6 (7 HSPs)
chr6 (14-207)||(27878847-27879040)
chr6 (14-171)||(26976269-26976424)
chr6 (14-171)||(1234725-1234880)
chr6 (14-171)||(27874128-27874283)
chr6 (14-153)||(30986552-30986687)
chr6 (14-166)||(30966683-30966831)
chr6 (114-169)||(18967912-18967967)
[»] chr4 (10 HSPs)
chr4 (14-207)||(30945614-30945807)
chr4 (14-209)||(30950320-30950515)
chr4 (14-171)||(24520163-24520318)
chr4 (14-171)||(42265927-42266082)
chr4 (14-171)||(42270646-42270801)
chr4 (14-171)||(48697270-48697425)
chr4 (14-171)||(48701959-48702114)
chr4 (14-169)||(10427315-10427459)
chr4 (14-84)||(48782850-48782918)
chr4 (43-108)||(1979269-1979334)
[»] chr7 (3 HSPs)
chr7 (29-207)||(30235006-30235186)
chr7 (14-169)||(16183769-16183913)
chr7 (14-98)||(8140101-8140183)
[»] chr5 (5 HSPs)
chr5 (14-175)||(29585438-29585597)
chr5 (14-171)||(34352272-34352427)
chr5 (14-171)||(34359980-34360135)
chr5 (14-171)||(41718434-41718589)
chr5 (14-171)||(41723160-41723315)
[»] chr2 (9 HSPs)
chr2 (89-204)||(830176-830291)
chr2 (89-204)||(825520-825635)
chr2 (14-171)||(5198793-5198948)
chr2 (14-167)||(15602905-15603056)
chr2 (21-145)||(28715816-28715934)
chr2 (14-104)||(8004161-8004250)
chr2 (26-98)||(13840384-13840456)
chr2 (114-169)||(30397136-30397191)
chr2 (21-96)||(13843939-13844014)
[»] chr8 (2 HSPs)
chr8 (14-171)||(9439510-9439665)
chr8 (14-171)||(9444230-9444385)
[»] scaffold0074 (1 HSPs)
scaffold0074 (114-169)||(27453-27508)
[»] chr1 (2 HSPs)
chr1 (114-169)||(46191266-46191321)
chr1 (14-62)||(30697252-30697300)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 54546063 - 54545870
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54546063 ttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 54545964  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54545963 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 54545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 5818651 - 5818806
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  5818651 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 5818748  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5818749 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 5823413 - 5823568
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  5823413 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 5823510  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5823511 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5823568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 2817401 - 2817486
Alignment:
Q  15 tcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattacca--ctctctcttataaataggagaatac 98  Q
    ||||| ||||||| |||||||| || |||||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  2817401 tcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatac 2817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  29 aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca 128  Q
    |||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||          ||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta----------ggagaaacctca 24671260  T
Q  129 caggagaaactaatttttctctctatatttttcctctcact 169  Q
    ||||||||||||  ||| |||||||||||||||||||||||    
T  24671261 caggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
Q  118 gagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  4579177 gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 35977160 - 35977103
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattac 71  Q
    |||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  35977160 ttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 27878847 - 27879040
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878847 ttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 27878946  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27878947 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttgtt 27879040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 26976269 - 26976424
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  26976269 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 26976366  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  26976367 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 26976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 1234880 - 1234725
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  1234880 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 1234783  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  1234782 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 1234725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 27874128 - 27874283
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |     
T  27874128 ttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaa 27874225  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  27874226 ctaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 27874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 30986687 - 30986552
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||      ||| |||||||    
T  30986687 ttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat------actgacactac 30986594  T
Q  114 ctaggagaaacctca-caggagaaactaatt-tttctctcta 153  Q
    |||||||||||||||  ||||||||||| || ||||||||||    
T  30986593 ctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 30966831 - 30966683
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||      ||| |  ||||    
T  30966831 ttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat------actgaggctac 30966738  T
Q  114 ctaggagaaacctcac-aggagaaactaatt-tttctctctatatttttcctctc 166  Q
    |||||||||||||||| || |||||||| || ||||||||||||||||| |||||    
T  30966737 ctaggagaaacctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 18967967 - 18967912
Alignment:
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
    ||||||||||||||||| |||||||||  ||| |||| ||||||||||||||||||    
T  18967967 ctaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 30945614 - 30945807
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945614 ttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 30945713  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30945714 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttgtt 30945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 30950320 - 30950515
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950320 ttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacactaacactac 30950419  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgttat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30950420 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaagtagttgttgtgttactttgttat 30950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 24520163 - 24520318
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  24520163 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 24520260  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  24520261 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 24520318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 42266082 - 42265927
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |     
T  42266082 ttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaa 42265985  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  42265984 ctaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 42265927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 42270801 - 42270646
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |     
T  42270801 ttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaa 42270704  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||    
T  42270703 ctaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat 42270646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 48697270 - 48697425
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  48697270 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 48697367  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  48697368 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 48697425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 48701959 - 48702114
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  48701959 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 48702056  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  48702057 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 48702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 10427459 - 10427315
Alignment:
Q  14 ttcactgagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacacta 112  Q
    |||||| ||||||| | ||||||| ||| ||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||          
T  10427459 ttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta------ 10427368  T
Q  113 cctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
        ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  10427367 ----ggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 48782918 - 48782850
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat 84  Q
    |||||| ||||||| |||||| | ||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  48782918 ttcactaagtggaagaaattagatgacctctctctaaatacatggag--tacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 1979334 - 1979269
Alignment:
Q  43 ctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaac 108  Q
    |||||||| | ||||||| ||| | |||||||||||||||||||| |||||||||| | |||||||    
T  1979334 ctctctaaatgcaaggagggtatatttaccactctctcttataaacaggagaatactagcactaac 1979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 30235186 - 30235006
Alignment:
Q  29 aaattacaggacctctctc-taactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctc 127  Q
    ||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  30235186 aaattacaggacctctctcctatttataaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacgtaagagaaacctc 30235087  T
Q  128 aca-ggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagtagttgttgtgttactttgtt 207  Q
    | | |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  30235086 ataaggagaaactaatttttctctctatatttttcctctcactactctattgagaacaagtagttgttgtgttactttgtt 30235006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 16183769 - 16183913
Alignment:
Q  14 ttcactgagtggaaaa-aattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacacta 112  Q
    |||||| ||||||| | ||||||| ||||||||||||| |||||||||||   ||||||| |||||||||  |||||||||||||| |||||||          
T  16183769 ttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta------ 16183860  T
Q  113 cctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
        ||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  16183861 ----ggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 8140101 - 8140183
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 98  Q
    |||||| ||||||| |||||| | ||||||||||| | |||||||||||   ||||||| |||||||||  ||||||||||||||    
T  8140101 ttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 29585438 - 29585597
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||| || |     
T  29585438 ttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatacta--actaatacaaa 29585535  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29585536 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactcta 29585597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 34352427 - 34352272
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  34352427 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 34352330  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34352329 ctaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat 34352272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 34360135 - 34359980
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |     
T  34360135 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacta--actaacacaaa 34360038  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360037 ctaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat 34359980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 41718589 - 41718434
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  41718589 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 41718492  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  41718491 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 41718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 41723315 - 41723160
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  41723315 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 41723218  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  41723217 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 41723160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 830291 - 830176
Alignment:
Q  89 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 830192  T
Q  189 gttgttgtgttacttt 204  Q
    ||||||||||||||||    
T  830191 gttgttgtgttacttt 830176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 825635 - 825520
Alignment:
Q  89 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 188  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta 825536  T
Q  189 gttgttgtgttacttt 204  Q
    ||||||||||||||||    
T  825535 gttgttgtgttacttt 825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 5198793 - 5198948
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  5198793 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 5198890  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  5198891 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 5198948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 15603056 - 15602905
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||| ||| |||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| ||||||||||||||| |  |||||||||      
T  15603056 ttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatacta--actaacactta 15602959  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctca 167  Q
    ||| ||||||||||| || | || ||||||||||| ||||||||||||||||||    
T  15602958 ctaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 28715934 - 28715816
Alignment:
Q  21 agtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggag 120  Q
    ||||||| |||||||||||| ||||||||| | |||||||||||||||||||||  | || |||||||||||||||      ||||||||||||||||||    
T  28715934 agtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat------actaacactacctaggag 28715841  T
Q  121 aaacctcacaggagaaactaatttt 145  Q
    |||||| ||| ||||||||| ||||    
T  28715840 aaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 8004250 - 8004161
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac 104  Q
    |||||||| ||||| |||||| |  |||||||| ||| |  ||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  8004250 ttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatactaacac 8004161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 13840384 - 13840456
Alignment:
Q  26 aaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac 98  Q
    |||||||||||  |||||||||||| || ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840384 aaaaaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 30397136 - 30397191
Alignment:
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||| |||||||||||    
T  30397136 ctaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13843939 - 13844014
Alignment:
Q  21 agtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat 96  Q
    ||||||| ||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843939 agtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 9439510 - 9439665
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  9439510 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 9439607  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  9439608 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 9439665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 9444230 - 9444385
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactac 113  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |     
T  9444230 ttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatacta--actaacacaaa 9444327  T
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat 171  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  9444328 ctaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat 9444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 27453 - 27508
Alignment:
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  27453 ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 46191321 - 46191266
Alignment:
Q  114 ctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact 169  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  46191321 ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 30697252 - 30697300
Alignment:
Q  14 ttcactgagtggaaaaaattacaggacctctctctaactacaaggagag 62  Q
    |||||| ||||||| |||||||| ||||||| ||||| |||||||||||    
T  30697252 ttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University