View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_34 (Length: 224)
Name: NF12513_low_34
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6843296 - 6843070
Alignment:
| Q |
1 |
aacactacgtctctctcttccttttttcaaaccctagccatcacaatcacaactacttttcttctagatctactaaagtggagtgatttagcggttaatt |
100 |
Q |
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| T |
6843296 |
aacactacgtctctctcttccttttttcaaaccctagccatcacaatcacaactacttttcttctagatctactaaagtggagtgatttagcggttaatt |
6843197 |
T |
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| Q |
101 |
ttgccccgaaatcaccc--------------ctttctttttagttaaacaaatgattttcataaattttcacctttctttcgtttattttggtgatttca |
186 |
Q |
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| T |
6843196 |
ttaccctgaaatcacccctccaaattgtattctttctttttagttaaacaaatgattttcataaattttcacttttctttcgtttatttttgtgatttca |
6843097 |
T |
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| Q |
187 |
tagtctagaacgtctgtttattttgat |
213 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
6843096 |
tagtctagcacgtctgtttattttgat |
6843070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 19384384 - 19384441
Alignment:
| Q |
124 |
ttttagttaaacaaatgattttcataaattttcacctttctttcgtttattttggtga |
181 |
Q |
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| T |
19384384 |
ttttagttaaacaagtaattttcacatattttcagctttcttccgtttatttttgtga |
19384441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 42261011 - 42261066
Alignment:
| Q |
160 |
tttctttcgtttattttggtgatttcatagtctagaacg--tctgtttattttgat |
213 |
Q |
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| T |
42261011 |
tttctttcgtttgttttggtgatttcatcgtctagcacgactttgtttattttgat |
42261066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 6646677 - 6646602
Alignment:
| Q |
118 |
ctttctttttagttaaacaaatgattttcataaattttcacctttctttcgtttattttggtgatttcatagtcta |
193 |
Q |
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| T |
6646677 |
ctttctctttagttaaataaaggattttcacatattttcagttttctttcgtttgattttgtgatttcttagtcta |
6646602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 18573358 - 18573419
Alignment:
| Q |
123 |
tttttagttaaacaaatgattttcataaattttcacctttctttcgtttattttggtgattt |
184 |
Q |
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| T |
18573358 |
tttttagttaaacaagtgattttcatatattttcaatcttctttcttttgtttttgtgattt |
18573419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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